DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gce and arnt2

DIOPT Version :9

Sequence 1:NP_001188593.1 Gene:gce / 32457 FlyBaseID:FBgn0261703 Length:959 Species:Drosophila melanogaster
Sequence 2:XP_009301213.1 Gene:arnt2 / 64277 ZFINID:ZDB-GENE-001207-3 Length:738 Species:Danio rerio


Alignment Length:752 Identity:149/752 - (19%)
Similarity:249/752 - (33%) Gaps:195/752 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 GPGGVPGGTNSGPGAGPGAMQAAYPGHSAHMHALHHQY-------PQPHPHAHHPQHPHHSPHPH 260
            ||..:||..   .|||...|..|.||......:....:       |.........|.|...    
Zfish    18 GPVSMPGAV---VGAGQVRMTGAMPGRGGKRRSAGMDFDDEDGEGPSKFSRYDDDQIPGDK---- 75

  Fly   261 HPHPHETMMEMFQLSNSGREARNRAEKNRRDKLNGSIQELSTMVPHVAESPRRVDKTAVLRFAAH 325
                          ....||..:..|:.||:|:...|.|||.|||..:...|:.||..:||.|..
Zfish    76 --------------ERYARENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTILRMAVS 126

  Fly   326 ALRLKHAFGNS----------LMQQRPQITDTLMDMLDSFFLTLTCH-GHILLISASIEQHLGHC 379
            .::.....||:          |.:|  ::...:::..|.|...:... |.::.:|.|:...|.|.
Zfish   127 HMKSMRGTGNTSTDGAYKPSFLTEQ--ELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNHP 189

  Fly   380 QSDLYGQSIMQITHPEDQNMLKQQLIPTE---LENLFDAH-GDSDAEGEPRQRSKAEEDAIDRKL 440
            ||:.:|.::.:..||:|.:.|::||..:|   ...:.|.. |....||   |:|..      |..
Zfish   190 QSEWFGSTLFEQVHPDDVDKLREQLSTSENSMTGRILDLKTGTVKKEG---QQSSM------RMC 245

  Fly   441 REDRRSFRVRLARAGPRSEPTAYEVVKIDGCFRRSDEAPRGVRSNHFSSNLQLIRRTRGRDDVIP 505
            ...||||..|:                      |...||    .:|.|.|.....|.|.|:.:.|
Zfish   246 MGSRRSFICRM----------------------RCGSAP----LDHISLNRLSSMRKRYRNGLGP 284

  Fly   506 ----------LH-------------TISGND----------IILTGCARIIRPPKIASRLIDANT 537
                      :|             ||...|          ::..|..::...|.    .:|.|.
Zfish   285 SKEGEAQYSVVHCTGYIKAWPPAGMTIPDEDTEAGQTSKYCLVAIGRLQVTSSPV----SMDMNG 345

  Fly   538 L----EYKTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSS 598
            |    |:.:||..||.|...|.|...|.||...::.......|.|.:|...:..:.:|:......
Zfish   346 LSVPTEFLSRHNSDGIITFVDPRCINVIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQ 410

  Fly   599 YGESTYRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNT----LLGEEEGKRRVQEMKKKFSV 659
            .....||...:|...:.:::..:...:..::::...:|.||    |..:::.:..|.: :...:.
Zfish   411 VLSVMYRFRMKNREWMLIRTSSFTFQNPYSDEIEYIICTNTNVKQLQQQQQAELEVHQ-RDGLTA 474

  Fly   660 IINTQIPQSTIDVPASEHPALLEKAVLRLIQNLQKSGENGGHDDGDEDDDAQDGDDDEEDDD--- 721
            ...:|:|.|.:..                          |.|:.|...|..:.....|.|..   
Zfish   475 YDLSQVPVSGVSA--------------------------GVHESGKSIDKTESLFSQERDPRFSD 513

  Fly   722 --------------DDQDDGARSMSEFGDPYGSHHGRSHHGSSALSSHGHGNAKTPPLALVPPEA 772
                          .....|.:.:...|.|:...|......||.:...|..:.::     ....|
Zfish   514 IYTGISTSEKKMMVPSSTSGGQQLYSQGSPFQPGHSGKSFSSSVIHVPGVNDIQS-----TAGSA 573

  Fly   773 SSVKSAITKSISVVNVT--------AAKHLRGIHASTAVKSPSSLGSCTCSDSHS----PCDFCQ 825
            ....|.|::.|:...|:        :.:......::.|..||..:||     |||    |..:..
Zfish   574 GQNLSQISRQINTGQVSWSGNRPPFSGQQQIPAQSNKAQSSPFGIGS-----SHSYQADPSSYSP 633

  Fly   826 -GAPTTDLQA--VGSNLKRGSTA-HVETEEKLSKRRF 858
             .:|.|...:  ..|||...:|| .|..|...|..:|
Zfish   634 LSSPATSSPSGNAYSNLANRNTAFDVSGESSQSGGQF 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gceNP_001188593.1 HLH 279..325 CDD:238036 19/45 (42%)
PAS 352..>405 CDD:238075 15/53 (28%)
PAS_11 539..646 CDD:291273 22/110 (20%)
arnt2XP_009301213.1 HLH 80..132 CDD:278439 19/51 (37%)
PAS 152..258 CDD:279347 29/136 (21%)
PAS 155..219 CDD:214512 16/63 (25%)
PAS_11 351..451 CDD:291273 19/99 (19%)
PAS 351..447 CDD:238075 18/95 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577660
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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