DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gce and tgo

DIOPT Version :9

Sequence 1:NP_001188593.1 Gene:gce / 32457 FlyBaseID:FBgn0261703 Length:959 Species:Drosophila melanogaster
Sequence 2:NP_001262397.1 Gene:tgo / 41084 FlyBaseID:FBgn0264075 Length:642 Species:Drosophila melanogaster


Alignment Length:564 Identity:123/564 - (21%)
Similarity:207/564 - (36%) Gaps:142/564 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 SGREARNRAEKNRRDKLNGSIQELSTMVPHVAESPRRVDKTAVLRFAAHALRLKHAFGNSLMQ-- 339
            :.||.....|:.||:|:...|.|||.|||..:...|:.||..:||.|...::.....||:...  
  Fly    13 ASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRGTGNTSSDGT 77

  Fly   340 QRPQ-ITD-----TLMDMLDSFFLTLTC-HGHILLISASIEQHLGHCQSDLYGQSIMQITHPEDQ 397
            .:|. :||     .:::..|.|...::| .|.::.:|.|:...|.:.|||.||.|:.:..||:|:
  Fly    78 YKPSFLTDQELKHLILEAADGFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDR 142

  Fly   398 NMLKQQLIPTELEN---LFDAHGDSDAEGEPRQRSKAEEDAIDRKLREDRRSF--RVRLARA--- 454
            ..:::||...|.:|   :.|....: .:.|..|.|.       |.....||.|  |:|:...   
  Fly   143 EKIREQLSTQESQNAGRILDLKSGT-VKKEGHQSSM-------RLSMGARRGFICRMRVGNVNPE 199

  Fly   455 ----------------GPRSEPTAYEVVKIDGCFRR---SDEAP-----RGVRSNHFSSNLQLIR 495
                            ||..:.|.|.||...|..:.   :|..|     |.|  :..||:..|:.
  Fly   200 SMVSGHLNRLKQRNSLGPSRDGTNYAVVHCTGYIKNWPPTDMFPNMHMERDV--DDMSSHCCLVA 262

  Fly   496 RTRGRDDVIPLHTISGNDIILTGCARIIRPPKIASRLIDANTLEYKTRHLIDGRIIDCDQRIGIV 560
            ..|     :.:.:.:.||  ::|               ..|..|:.|||.:||:....|||:..:
  Fly   263 IGR-----LQVTSTAAND--MSG---------------SNNQSEFITRHAMDGKFTFVDQRVLNI 305

  Fly   561 AGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQSKGYLEID 625
            .||...|:.....:.|.|.:|...:..:..|:...........||...:|...::|:::.|..::
  Fly   306 LGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLN 370

  Fly   626 KETNKVHSFVCVNTLLGEEEGKRRVQEMKKKFSVIINTQIPQSTIDVPASEHPALLEKAVLRLIQ 690
            ..|::|...||.|:     .||                           :.|.|.|:.|.....:
  Fly   371 PYTDEVEYIVCTNS-----SGK---------------------------TMHGAPLDAAAAHTPE 403

  Fly   691 NLQKSGENGGH-----------------DDGDEDDD--------AQDGDDDEEDDDDDQDDGARS 730
            .:|:..:...|                 ..|...:|        |......::.....|..|:..
  Fly   404 QVQQQQQQEQHVYVQAAPGVDYARRELTPVGSATNDGMYQTHMLAMQAPTPQQQQQQQQRPGSAQ 468

  Fly   731 MSEFGDPYGSHHGRSHHGSSALSSHGHGNAKTPPLALVPPEASS 774
            .:..|..|.:.|       |..|:.|     ..|||.:|...:|
  Fly   469 TTPVGYTYDTTH-------SPYSAGG-----PSPLAKIPKSGTS 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gceNP_001188593.1 HLH 279..325 CDD:238036 19/45 (42%)
PAS 352..>405 CDD:238075 17/53 (32%)
PAS_11 539..646 CDD:291273 26/106 (25%)
tgoNP_001262397.1 HLH 15..67 CDD:278439 19/51 (37%)
PAS 87..192 CDD:279347 29/112 (26%)
PAS 90..154 CDD:214512 18/63 (29%)
PAS_11 283..384 CDD:291273 25/100 (25%)
PAS 283..380 CDD:238075 23/96 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444969
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23042
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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