DRSC/TRiP Functional Genomics Resources

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Protein Alignment gce and cyc

DIOPT Version :10

Sequence 1:NP_511160.2 Gene:gce / 32457 FlyBaseID:FBgn0261703 Length:959 Species:Drosophila melanogaster
Sequence 2:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster


Alignment Length:427 Identity:102/427 - (23%)
Similarity:170/427 - (39%) Gaps:112/427 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 REARNRAEKNRRDKLNGSIQELSTMVPHVAESPRRVDKTAVLRFAAHALR------LKHAFGNSL 337
            ::..:..||.||||:|..|.|||:|:|......|::||..|||.|...||      ..|.|..| 
  Fly    32 KQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIRGSGSLHPFNGS- 95

  Fly   338 MQQRPQ-ITDTLMDML-----DSFFLTLTC-HGHILLISASIEQHLGHCQSDLYGQSIMQITHPE 395
             ..||. ::|..:.|:     :.|...:.| .|.||.:|.|:...|...|:||.|||...:.||:
  Fly    96 -DYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLGQSWFDVLHPK 159

  Fly   396 DQNMLKQQLIPTELENLFDAHGDSDAEGEPRQRSKAEEDAIDRK----LRED------------R 444
            |...:|:||              |..|..||:|      .||.|    ::.|            |
  Fly   160 DIGKVKEQL--------------SSLEQCPRER------LIDAKTMLPVKTDVPQSLCRLCPGAR 204

  Fly   445 RSF--RVRLARAG-------------------PRSEPTA---YEVVKIDGCFRR----SDEAPRG 481
            |||  |::|..|.                   .:|..|.   |.|::..|..:.    .|| .:.
  Fly   205 RSFFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWTPIKDE-DQD 268

  Fly   482 VRSNHFSSNLQLIRRTRGRDDVIPLHTISGNDIILTGCARIIRPPKIASRLIDANT--------L 538
            ..|:..::||.                      .|....||  ||.:.:..:.|:.        :
  Fly   269 ADSDEQTTNLS----------------------CLVAIGRI--PPNVRNSTVPASLDNHPNIRHV 309

  Fly   539 EYKTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGEST 603
            .:.:||..:|:.:..|||..:|.|::..|:...|.:.:.||:|:..::.:.:.:...........
  Fly   310 LFISRHSGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQV 374

  Fly   604 YRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNTL 640
            ||...::.:.|.|||:.....:..|:::...:..|::
  Fly   375 YRFRCKDNSYIQLQSEWRAFKNPWTSEIDYIIAKNSV 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gceNP_511160.2 bHLH_PAS 279..333 CDD:381397 23/59 (39%)
PAS 352..>405 CDD:238075 19/58 (33%)
PAS_11 537..646 CDD:464214 21/112 (19%)
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 23/59 (39%)
PAS 111..173 CDD:214512 21/75 (28%)
PAS_11 311..411 CDD:464214 21/99 (21%)

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