DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gce and Clk

DIOPT Version :9

Sequence 1:NP_001188593.1 Gene:gce / 32457 FlyBaseID:FBgn0261703 Length:959 Species:Drosophila melanogaster
Sequence 2:NP_001014576.1 Gene:Clk / 38872 FlyBaseID:FBgn0023076 Length:1027 Species:Drosophila melanogaster


Alignment Length:696 Identity:145/696 - (20%)
Similarity:260/696 - (37%) Gaps:166/696 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 REARNRAEKNRRDKLNGSIQELSTMVPHVAESPRRVDKTAVLRFAAHALR--------------- 328
            |::||.:||.|||:.|..:.:||.:   ::.|.|::||:.||:.....|:               
  Fly    17 RKSRNLSEKKRRDQFNSLVNDLSAL---ISTSSRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQ 78

  Fly   329 --LKHAFGNSLMQQRPQITDTLMDMLDSFFLTLTCHGHILLISASIEQHLGHCQSDLYGQSIMQI 391
              .|.||     ....:.|..:::.||.|.:..:..|.|...|.||...||:...|||..:|..:
  Fly    79 QDWKPAF-----LSNDEYTHLMLESLDGFMMVFSSMGSIFYASESITSQLGYLPQDLYNMTIYDL 138

  Fly   392 THPED-QNMLKQQLIPTELENLFDAHGDSDAEGEPRQRSKAEEDAIDRKLREDRRSFRVRLARAG 455
            .:..| :.:|...:.||.:.             ||||...:..:.|         :|...|.|.|
  Fly   139 AYEMDHEALLNIFMNPTPVI-------------EPRQTDISSSNQI---------TFYTHLRRGG 181

  Fly   456 -PRSEPTAYEVVKIDGCFRRSDEAPRGVRSNHFSSNLQLIRRTRGRDDVIPL------HTISGND 513
             .:.:..|||:||..|.||.......|       |:.::...:.|:..|:|.      :......
  Fly   182 MEKVDANAYELVKFVGYFRNDTNTSTG-------SSSEVSNGSNGQPAVLPRIFQQNPNAEVDKK 239

  Fly   514 IILTGCARIIRPPKIAS-RLIDANTLEYKTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFM 577
            ::..|..|:..|..|.. .:||..:.|:.::|.::.:.:..|.|...:.|||..||...|.:.:.
  Fly   240 LVFVGTGRVQNPQLIREMSIIDPTSNEFTSKHSMEWKFLFLDHRAPPIIGYMPFEVLGTSGYDYY 304

  Fly   578 HNDDVRWVIVA---LRQMYDCNSSYGESTYRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNT 639
            |.||:..::..   |||..:..|.|    ||..|:....|:||:..|:...:..:|....||.:.
  Fly   305 HFDDLDSIVACHEELRQTGEGKSCY----YRFLTKGQQWIWLQTDYYVSYHQFNSKPDYVVCTHK 365

  Fly   640 LLGEEEGKRRVQEMKKKFSVIINTQIPQSTIDVPASEHPALLEKAVLRLIQNLQKSGENGGH--- 701
            ::...|                                          ::::.:|.|:..|:   
  Fly   366 VVSYAE------------------------------------------VLKDSRKEGQKSGNSNS 388

  Fly   702 --DDGDEDDDAQDGDDDEEDDDDDQDDGARSMSEFGDPYGSHHGRSHHGSSALSSHGHGNAKTPP 764
              ::|.....|..|...:      ......::.:|  ...|.:..|....::|:|.|...|.|.|
  Fly   389 ITNNGSSKVIASTGTSSK------SASATTTLRDF--ELSSQNLDSTLLGNSLASLGTETAATSP 445

  Fly   765 LALVPP--EASSVKSAITKSISVVNVTAAKHLRGIHASTAVKSPSSLGSCTCSDSHSPCDFCQGA 827
            .....|  .||:|:.:.:..|:.:..:......|..:||.: ||.:...|...::..     ..:
  Fly   446 AVDSSPMWSASAVQPSGSCQINPLKTSRPASSYGNISSTGI-SPKAKRKCYFYNNRG-----NDS 504

  Fly   828 PTTDLQAVGSNLKRGSTAHVETEEKLSKRRFIPSTEIEHVLHTSLDQIGRNLTQQLNVARNLREQ 892
            .:|.:.......::....||.::.:..:     |...||......:|...::.||..        
  Fly   505 DSTSMSTDSVTSRQSMMTHVSSQSQRQR-----SHHREHHRENHHNQSHHHMQQQQQ-------- 556

  Fly   893 SQRYELPHANQRFDEIMQEHQKQSELYVNIKSEYEVQLQHKASTRK 938
                   |.||:     |:||:..:|        :.||||...|.|
  Fly   557 -------HQNQQ-----QQHQQHQQL--------QQQLQHTVGTPK 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gceNP_001188593.1 HLH 279..325 CDD:238036 17/45 (38%)
PAS 352..>405 CDD:238075 16/53 (30%)
PAS_11 539..646 CDD:291273 28/109 (26%)
ClkNP_001014576.1 HLH 16..68 CDD:238036 18/53 (34%)
PAS 93..153 CDD:214512 16/59 (27%)
PAS 264..366 CDD:238075 28/105 (27%)
PAS_11 265..368 CDD:291273 28/106 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444971
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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