DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gce and Ncoa3

DIOPT Version :9

Sequence 1:NP_001188593.1 Gene:gce / 32457 FlyBaseID:FBgn0261703 Length:959 Species:Drosophila melanogaster
Sequence 2:NP_032705.2 Gene:Ncoa3 / 17979 MGIID:1276535 Length:1403 Species:Mus musculus


Alignment Length:782 Identity:151/782 - (19%)
Similarity:263/782 - (33%) Gaps:200/782 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 EKNRRDKLNGSIQELSTMV----PHVAESPRRVDKTAVLRFAAHALRLKHAFGNSLMQ----QRP 342
            ||.||::.:..|:||:.::    ..:.....:.||.|:|:.....:|.....|.::..    |:.
Mouse    35 EKWRREQESKYIEELAELISANLSDIDNFNVKPDKCAILKETVRQIRQIKEQGKTISSDDDVQKA 99

  Fly   343 QITDT-------------LMDMLDSFFLTLTCHGHILLISASIEQHLGHCQSDLYGQSIMQITHP 394
            .::.|             |:..||.|...:...|:|:.:|.::.|:|.:.|.||...|:..|.|.
Mouse   100 DVSSTGQGVIDKDSLGPLLLQALDGFLFVVNRDGNIVFVSENVTQYLQYKQEDLVNTSVYSILHE 164

  Fly   395 ED-QNMLKQQLIPTELENLFDAHGDSDAEGEPRQRSKAEEDAIDRKLREDRRSFRVRL------- 451
            :| ::.||.  :|....|     |.|......||:|               .:|..|:       
Mouse   165 QDRKDFLKH--LPKSTVN-----GVSWTNENQRQKS---------------HTFNCRMLMKTHDI 207

  Fly   452 ---ARAGPRSEPTAYEVVKIDGCFRRSDEAPRGVRSNHFSSNLQLIRRTRGRDDVIPLHTISGND 513
               ..|.|.:. ..||.::   ||..|.  ||.:..                         .|.|
Mouse   208 LEDVNASPETR-QRYETMQ---CFALSQ--PRAMLE-------------------------EGED 241

  Fly   514 IILTGCARIIRPPKIASRL---IDANTLEYKTRHLIDGRIIDCDQ---RIGIVAGYMTDEVRNLS 572
            :   .|..|.    :|.|:   ..::...:.|||.:.|::::.|.   |..:..|: .|.:|...
Mouse   242 L---QCCMIC----VARRVTAPFPSSPESFITRHDLSGKVVNIDTNSLRSSMRPGF-EDIIRRCI 298

  Fly   573 PFTFMHNDDVRWVIVALRQMYDCNSSYGES---TYRLFTRNGNIIYLQSKGYLEIDKETNKVHSF 634
            ...|..||...|   :.::.|.....:|.:   .||....:|.|:..|:|..|..:..||..|.|
Mouse   299 QRFFSLNDGQSW---SQKRHYQEAYVHGHAETPVYRFSLADGTIVSAQTKSKLFRNPVTNDRHGF 360

  Fly   635 VCVNTLLGEEEGKRRVQEMKKKFSVIINTQIPQSTIDVPASE---HPALLEKAVLRLIQNLQ--- 693
            :..:.|..|:.|.|                 |...   ||.:   .||......:...||:|   
Mouse   361 ISTHFLQREQNGYR-----------------PNPN---PAGQGIRPPAAGCGVSMSPNQNVQMMG 405

  Fly   694 ----------KSGENGGHDDGDEDDDAQDGDDDEEDDDDDQDDGARSMSEFGDPYGSHH------ 742
                      .:|:.||...|.....|...............:.:..:|....|:||..      
Mouse   406 SRTYGVPDPSNTGQMGGARYGASSSVASLTPGQSLQSPSSYQNSSYGLSMSSPPHGSPGLGPNQQ 470

  Fly   743 ----GRSHHGSSALSSHGHGNAKTPPLALVPPEASSVKSAITKSISVVNVTAAKHLRGIHAS--T 801
                ...:.||..::||....|......:.|...:...|..:.|:|.:...:    .|:..|  :
Mouse   471 NIMISPRNRGSPKMASHQFSPAAGAHSPMGPSGNTGSHSFSSSSLSALQAIS----EGVGTSLLS 531

  Fly   802 AVKSP------------SSLGSCTCSDSHSPCD-FCQGAPTTDLQAVGSNLKRGSTAHVETEEKL 853
            .:.||            |.....:..||.||.. :|:..|..  .:|..:..|...:..|::|..
Mouse   532 TLSSPGPKLDNSPNMNISQPSKVSGQDSKSPLGLYCEQNPVE--SSVCQSNSRDHPSEKESKESS 594

  Fly   854 SKRRFIPSTEIE--------HVLHTSLDQIGRNLTQQLNVARNLREQSQRYELPH---------- 900
            .:....|...:|        .:|..|.|..|.:......:..|.::.|.....|.          
Mouse   595 GEVSETPRGPLESKGHKKLLQLLTCSSDDRGHSSLTNSPLDPNCKDSSVSVTSPSGVSSSTSGTV 659

  Fly   901 ---ANQRFDEIMQEHQKQSELYVNIKSEYEVQL-------QHKASTRKSSDSDRNQEQPPPPLQE 955
               :|.....:.::|:...:|..|..|..||..       :..:||....:....|||..|..:|
Mouse   660 SSTSNVHGSLLQEKHRILHKLLQNGNSPAEVAKITAEATGKDTSSTASCGEGTTRQEQLSPKKKE 724

  Fly   956 DD 957
            ::
Mouse   725 NN 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gceNP_001188593.1 HLH 279..325 CDD:238036 11/42 (26%)
PAS 352..>405 CDD:238075 17/53 (32%)
PAS_11 539..646 CDD:291273 28/112 (25%)
Ncoa3NP_032705.2 bHLH_SF 33..102 CDD:381792 14/66 (21%)
PAS 117..172 CDD:214512 16/54 (30%)
PAS_11 262..372 CDD:373151 28/113 (25%)
NCOA_u2 451..564 CDD:374708 22/116 (19%)
SRC-1 608..696 CDD:370145 14/87 (16%)
DUF4927 714..801 CDD:374467 5/13 (38%)
Nuc_rec_co-act 1056..1103 CDD:312376
Med15 1094..>1398 CDD:312941
DUF1518 1270..1326 CDD:369380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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