DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gce and PASD1

DIOPT Version :9

Sequence 1:NP_001188593.1 Gene:gce / 32457 FlyBaseID:FBgn0261703 Length:959 Species:Drosophila melanogaster
Sequence 2:NP_775764.2 Gene:PASD1 / 139135 HGNCID:20686 Length:773 Species:Homo sapiens


Alignment Length:774 Identity:138/774 - (17%)
Similarity:242/774 - (31%) Gaps:313/774 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 RAEKNRRDKLN-GSIQELSTMVPHVAESPRRVDKTAVLRFAAHALRLKHAFGNSLMQQRPQITDT 347
            |.|| ||||:| .|.|.....:|...                     .:.:.|       |:|  
Human     4 RGEK-RRDKVNPKSSQRKLNWIPSFP---------------------TYDYFN-------QVT-- 37

  Fly   348 LMDMLDSFFLTLTCHGHILLISASIEQHLGHCQSDLYGQSIMQITHPEDQNMLKQQLI------- 405
             :.:||.|.:||:..|.|:.::.:|...|||..:::.|:.::.:...|:::.:.|::|       
Human    38 -LQLLDGFMITLSTDGVIICVAENISSLLGHLPAEIVGKKLLSLLPDEEKDEVYQKIILKFPLLN 101

  Fly   406 -PTELE--------NLFDAHGDSDAEGEPRQRSKAEEDAIDRKLREDRRSFRVRLARAGPRSEPT 461
             .|.:|        |:  .||||                                         :
Human   102 SETHIEFCCHLKRGNV--EHGDS-----------------------------------------S 123

  Fly   462 AYEVVKI-----DGCFRRSDEAP---RGVRSNHFSSNLQLIRRTRGRDDVIPLHTISGNDIILTG 518
            |||.||.     |.|    :|.|   .|:.|:|..::.........|             :.|.|
Human   124 AYENVKFIVNVRDIC----NEFPVVFSGLFSSHLCADFAACVPQEDR-------------LYLVG 171

  Fly   519 CARIIRPPKIASRLIDANTLEYKTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFMHNDDVR 583
            ...|:| .::..:|       |.::.:.|..::..|          :||    .||         
Human   172 NVCILR-TQLLQQL-------YTSKAVSDEAVLTQD----------SDE----EPF--------- 205

  Fly   584 WVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQ----------SKGYLEIDK-----ETNKVHS 633
                    :.:.:||.|:..:    .:...:|::          |...::|.:     ....||.
Human   206 --------VGELSSSQGQRGH----TSMKAVYVEPAAAAAAAAISDDQIDIAEVEQYGPQENVHM 258

  Fly   634 FV------CVNTLLGE---EEGKRRVQEMKKKFSVIINTQIPQSTIDVPASEHPALLEKAVLRLI 689
            ||      |.:|:..:   |.....:|:.:.:..|  |.......:|:..|             :
Human   259 FVDSDSTYCSSTVFLDTMPESPALSLQDFRGEPEV--NPLYRADPVDLEFS-------------V 308

  Fly   690 QNLQKSGENGGHDDGDEDDDA----QDGDDDEEDDDDDQDDGARSMSEFGDPYGSHHGRSHHGSS 750
            ..:....:.|..|..|.::..    |.|..|..|.:|..|.||.                  |:|
Human   309 DQVDSVDQEGPMDQQDPENPVAPLDQAGLMDPVDPEDSVDLGAA------------------GAS 355

  Fly   751 ALSSHGHGNAKTPPLALVPPEASSVKS---AITKSI-------------SVVNVTAAKHLRGIHA 799
            |           .||....|.|..:.|   .:.|.:             ::.|...|..|...|.
Human   356 A-----------QPLQPSSPVAYDIISQELELMKKLKEQLEERTWLLHDAIQNQQNALELMMDHL 409

  Fly   800 STAVKSPSSLGSCTCSDSHS----------------------PCD---FCQGAPTTDLQAVGSNL 839
            .   |.|::|......|..|                      |.|   ||..:.:..|:..| .|
Human   410 Q---KQPNTLRHVVIPDLQSSEAVPKKQQKQHAGQVKRPLPHPKDVKCFCGLSLSNSLKNTG-EL 470

  Fly   840 KRGSTAH-----VETEEKLSKRRFIPSTEIEHVLHTSLDQIGRNLTQQLNVARNLREQSQRYELP 899
            :....|.     |:.|:.|.:::                   |.|.:||...|..|:..::.::.
Human   471 QEPCVAFNQQQLVQQEQHLKEQQ-------------------RQLREQLQQLREQRKVQKQKKMQ 516

  Fly   900 HANQRFDEIMQEHQKQSELYVNIKSEYEVQLQHKASTRKSSDSDRNQEQPPPPLQEDDQ 958
            ...:..::.|||.:|        ..|...|.:.|...||.......|::|    :|:.|
Human   517 EKKKLQEQKMQEKKK--------LQEQRRQKKKKLQERKKWQGQMLQKEP----EEEQQ 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gceNP_001188593.1 HLH 279..325 CDD:238036 11/41 (27%)
PAS 352..>405 CDD:238075 14/52 (27%)
PAS_11 539..646 CDD:291273 20/130 (15%)
PASD1NP_775764.2 PAS 41..137 CDD:238075 27/138 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..361 16/76 (21%)
Necessary for transcriptional repression. /evidence=ECO:0000269|PubMed:25936801 365..412 7/49 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 427..448 0/20 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 506..569 14/70 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 732..773
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165144517
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.930

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