DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL37a and kcnc4

DIOPT Version :9

Sequence 1:NP_001259561.1 Gene:RpL37a / 32446 FlyBaseID:FBgn0030616 Length:93 Species:Drosophila melanogaster
Sequence 2:NP_001182125.1 Gene:kcnc4 / 799410 ZFINID:ZDB-GENE-060503-773 Length:603 Species:Danio rerio


Alignment Length:34 Identity:10/34 - (29%)
Similarity:14/34 - (41%) Gaps:9/34 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTC 34
            |...:.||||..:.:       .|:|  .|..||
Zfish   479 MVLDSGSFGKSESNS-------PRNS--TQSDTC 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL37aNP_001259561.1 PTZ00073 1..91 CDD:240257 10/34 (29%)
kcnc4NP_001182125.1 amino terminal assembly domain 1..206
Potassium_chann 1..29 CDD:288290
BTB 38..144 CDD:197585
BTB_2 38..136 CDD:280393
S1-S6 membrane domain 207..516 10/34 (29%)
Ion_trans 248..461 CDD:278921
Ion_trans_2 365..451 CDD:285168
post S6 proximal carboxyl terminal domain 517..581
distal carboxyl terminus 582..603
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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