DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL37a and Kcnc3

DIOPT Version :9

Sequence 1:NP_001259561.1 Gene:RpL37a / 32446 FlyBaseID:FBgn0030616 Length:93 Species:Drosophila melanogaster
Sequence 2:XP_036008594.1 Gene:Kcnc3 / 16504 MGIID:96669 Length:807 Species:Mus musculus


Alignment Length:17 Identity:6/17 - (35%)
Similarity:10/17 - (58%) Gaps:4/17 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 WSVKAKRRKTTGTGRMQ 65
            ||.:.::    |||:.|
Mouse     8 WSFRGRQ----GTGKQQ 20

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL37aNP_001259561.1 PTZ00073 1..91 CDD:240257 6/17 (35%)
Kcnc3XP_036008594.1 BTB_KCNC1_3 91..204 CDD:349721
Ion_trans 290..551 CDD:395416
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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