DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL37a and kcnc2

DIOPT Version :9

Sequence 1:NP_001259561.1 Gene:RpL37a / 32446 FlyBaseID:FBgn0030616 Length:93 Species:Drosophila melanogaster
Sequence 2:NP_001082998.2 Gene:kcnc2 / 100037377 ZFINID:ZDB-GENE-070410-118 Length:597 Species:Danio rerio


Alignment Length:72 Identity:16/72 - (22%)
Similarity:25/72 - (34%) Gaps:20/72 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TKGTSSFG-----KRHNKTHTLCRRCGRSSYHIQKSTCAQCG-------YPAAKLRSYNWSVKAK 54
            |:|....|     :||        |.|.:..|:.....|.|.       .|..::...:.||:.:
Zfish   478 TQGELCIGQSRGLERH--------RSGETLVHLHAVLSADCSAGSDISMSPEERMPMRHSSVREQ 534

  Fly    55 RRKTTGT 61
            ...|.||
Zfish   535 DHHTEGT 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL37aNP_001259561.1 PTZ00073 1..91 CDD:240257 16/72 (22%)
kcnc2NP_001082998.2 amino terminal assembly domain 1..185
BTB 10..123 CDD:197585
BTB_2 10..115 CDD:280393
S1-S6 membrane domain 186..504 8/33 (24%)
Ion_trans 235..442 CDD:278921
Ion_trans_2 <385..432 CDD:285168
post S6 proximal carboxyl terminal domain 505..560 8/37 (22%)
distal carboxyl terminus 561..597
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.