DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-2 and zgc:77486

DIOPT Version :9

Sequence 1:NP_572996.1 Gene:Lsd-2 / 32437 FlyBaseID:FBgn0030608 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_998037.1 Gene:zgc:77486 / 405808 ZFINID:ZDB-GENE-040426-2056 Length:238 Species:Danio rerio


Alignment Length:55 Identity:16/55 - (29%)
Similarity:22/55 - (40%) Gaps:20/55 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 EQSGGSSSD-----ACSPFG---------------TTTSTTTTTTTSSTSNNKPV 334
            :|.||.:|.     |.||.|               ||.:.|.|...:|:|:..||
Zfish    41 QQGGGRNSPPGEKAATSPVGSPGASPVTVESTPLPTTEAGTPTEERTSSSSPSPV 95

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-2NP_572996.1 Perilipin 40..>287 CDD:281086
zgc:77486NP_998037.1 zf-A20 12..35 CDD:280010
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 65 1.000 Domainoid score I10024
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 65 1.000 Inparanoid score I5363
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001967
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14024
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.060

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