DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lsd-2 and plin1

DIOPT Version :10

Sequence 1:NP_572996.1 Gene:Lsd-2 / 32437 FlyBaseID:FBgn0030608 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_021323484.1 Gene:plin1 / 100034463 ZFINID:ZDB-GENE-050419-213 Length:467 Species:Danio rerio


Alignment Length:304 Identity:63/304 - (20%)
Similarity:113/304 - (37%) Gaps:68/304 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 QPKDAKDLLPHLESLERIIKLPVVNAAWDKSQDVYGKVKGKNRVFEWALTAAEDCVTR----AVT 86
            :.||..::|.......||:.:..||||.:..:..|...|..:.:........|..|:|    ||.
Zfish     4 EKKDTGEVLKDQNVFFRILNIRSVNAALESIEKTYTSTKQSHPIISSVCGLYEKGVSRAGNLAVW 68

  Fly    87 TAAPFVTKLDRPIAYVDQTLVKGIDKLEVKAPIIKDTPQEIYNQAKSKVIDVVQ----------P 141
            :..|.:..|...:...:....||:|:||.|.|.::..|.|:....|..:...::          .
Zfish    69 SMKPALHVLQPQLVAANSMACKGLDRLEEKVPALQSPPAELAANIKGLMSSTLEAAKDGITCPIK 133

  Fly   142 HLERVV--KFKAAGQQKAASLKD------------LAWQKANEVLATQYGSLAVNGVDTTTALAE 192
            |...||  |..:..||...:|..            ||.|:|:..|                :|.|
Zfish   134 HSSNVVLDKVSSRYQQSKNTLSGGIQYILNSKLVFLAEQRASRAL----------------SLTE 182

  Fly   193 RLLEYYFPKCESDVEED--NDDKQNAVVQNGKSSENDMPVPASEDPVLHTVQTVGRLSNKISRRV 255
            .|::...|......|.|  .:::|.:.|    .:.:.||:          ...:|.|::.|.||.
Zfish   183 NLIDCILPGTSDKTENDRSTEEQQESYV----GASDPMPI----------FSRLGALASTICRRA 233

  Fly   256 YRNVSRQIK-QVQKGNINDYLSSLIAALK-LHQYINFINSSMGT 297
            :.....|:: ...:|:      :|:..:. |:..:.|..|:|.|
Zfish   234 FEKTFAQLQLSTHQGH------TLVKRIPGLNPLVEFTMSTMRT 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-2NP_572996.1 Perilipin 40..>301 CDD:460784 60/290 (21%)
plin1XP_021323484.1 Perilipin 10..331 CDD:460784 61/298 (20%)

Return to query results.
Submit another query.