DRSC/TRiP Functional Genomics Resources

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Protein Alignment dob and pnpla4

DIOPT Version :9

Sequence 1:NP_572995.1 Gene:dob / 32436 FlyBaseID:FBgn0030607 Length:480 Species:Drosophila melanogaster
Sequence 2:XP_002939012.2 Gene:pnpla4 / 100495026 XenbaseID:XB-GENE-968680 Length:271 Species:Xenopus tropicalis


Alignment Length:245 Identity:96/245 - (39%)
Similarity:148/245 - (60%) Gaps:6/245 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SLSFSGCGFLGIYHVGVAVCLRQHAPQLL--LERIAGASAGALAACCLICDLPLECMAGDFLRVV 70
            :||||..|||||||:|.|..|.:|..::|  ::..||||||:|.|..|:........:.:||...
 Frog    21 NLSFSASGFLGIYHLGAASALLKHGQKMLKYVKCFAGASAGSLVATVLLTAPDKIKESKEFLYAF 85

  Fly    71 QE-IQRHSLGAFSPWFNLPECLLEGMRSWLPEDAHLLASGRLHISLTRVSDRRNVVMSEFSSRQE 134
            .| :::..|||.:|.::..:.|..|:.|.||.:||.:|..||::|:|....|:|.::|.|:||:|
 Frog    86 SEDVRKQKLGAMTPAYDFMKNLRGGIESILPVNAHEMAEHRLYVSITNAKSRKNCLVSHFASREE 150

  Fly   135 LLQALMCSCFIPGLSGLVPPQVRGVRYMDGAFSDNLP-LLDEHTVTVSPFCGESDICPRDQNPHL 198
            |::.|:.|.::|..:|:.....:|.::.||.|:|:|| |.:..|:|||||.|..||||:|:  .|
 Frog   151 LIKVLLASSYVPLYAGIKAVDYKGEKWFDGGFTDSLPHLPNGRTITVSPFSGRLDICPQDK--PL 213

  Fly   199 LQLNINWANTCIRLSRRNLRRMVRILVPGRADFMANFCQQGYDDTLQFLR 248
            ..|.:.:|...|.||..||||:.:.|.|.|.:.|....|.||.|.:.||:
 Frog   214 WDLYVTFAKHSILLSEANLRRLNQALFPPRQEKMEAIFQDGYKDAVNFLQ 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dobNP_572995.1 Pat_iPLA2 7..253 CDD:132857 96/245 (39%)
EIN3 <270..>375 CDD:296674
pnpla4XP_002939012.2 Pat_PNPLA4 21..266 CDD:132861 96/245 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1204225at2759
OrthoFinder 1 1.000 - - FOG0000670
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R17075
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.950

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