DRSC/TRiP Functional Genomics Resources

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Protein Alignment opm and TMED9

DIOPT Version :9

Sequence 1:NP_572994.1 Gene:opm / 32435 FlyBaseID:FBgn0264389 Length:242 Species:Drosophila melanogaster
Sequence 2:NP_059980.2 Gene:TMED9 / 54732 HGNCID:24878 Length:235 Species:Homo sapiens


Alignment Length:230 Identity:52/230 - (22%)
Similarity:100/230 - (43%) Gaps:35/230 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IWLGMPGLVLLLSIAALLLGVQDAEAYDKEM---TVYVDAGKTECLYHSVRQGETIDFEYQVIDG 65
            :||...|..|...|     |..:.:.:.:|:   |:.:...:|: ||...|:      |||....
Human    29 LWLATRGSALYFHI-----GETEKKCFIEEIPDETMVIGNYRTQ-LYDKQRE------EYQPATP 81

  Fly    66 GHGDLDISFTLLDPIGLVIVSDFKKPENVHRHEVAKEGDYRFCFDNS---FSMFNRKTVFFELIV 127
            |   |.:...:.||...||::.....|..........|:::.|..::   ||:|....:...|.:
Human    82 G---LGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDI 143

  Fly   128 EREGEELQGDTQWNEADELTGLSRDEYYDMKVQDIMDFIGRIRLQLTKARQLQDVLRSHEARDRN 192
            : .||......:....|:|:.|      .::|:.:::       |:.:.::.|:..|..|.|.|.
Human   144 Q-VGEHANDYAEIAAKDKLSEL------QLRVRQLVE-------QVEQIQKEQNYQRWREERFRQ 194

  Fly   193 LAESNFQKVNHWSMVQISAMIGVGLIQVFMLRSIF 227
            .:||..|:|..||::|...::.:|:.|:..|:|.|
Human   195 TSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFF 229

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
opmNP_572994.1 EMP24_GP25L 33..227 CDD:279450 45/199 (23%)
TMED9NP_059980.2 EMP24_GP25L 37..230 CDD:307313 49/222 (22%)
Required for interaction with STX17. /evidence=ECO:0000269|PubMed:21545355 121..160 7/39 (18%)
COPI vesicle coat-binding. /evidence=ECO:0000255 228..235 1/2 (50%)