DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdgy and LYS2

DIOPT Version :9

Sequence 1:NP_001188590.1 Gene:pdgy / 32426 FlyBaseID:FBgn0027601 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_009673.1 Gene:LYS2 / 852412 SGDID:S000000319 Length:1392 Species:Saccharomyces cerevisiae


Alignment Length:636 Identity:133/636 - (20%)
Similarity:229/636 - (36%) Gaps:149/636 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 TIPNVPLHEYVWRDF------------KKWERRTAAVCVI--------TDRQYTFAQMRDASAAF 115
            ::|: |.....|.||            :.:..||   ||:        ..|.:|:..:...|...
Yeast   222 SLPD-PTKNLGWCDFVGCIHDIFQDNAEAFPERT---CVVETPTLNSDKSRSFTYRDINRTSNIV 282

  Fly   116 AVRLQTKFNLQKPDVLAICLPNLPEYPIATLGAIEAGLTVTTVNPVYTPDEIARQLTFSGAKFLV 180
            |..| .|..:::.||:.|......:..:..:|.::||.|.:.::|.|.|   |||..:.|    |
Yeast   283 AHYL-IKTGIKRGDVVMIYSSRGVDLMVCVMGVLKAGATFSVIDPAYPP---ARQTIYLG----V 339

  Fly   181 GTVSGFATLSQASKL-------VGRQIPIAVVRTSAEEALPEGAIDFSELTSTQNV-----RYED 233
            ....|...:..|.:|       :..::.| |.|.::......|.|:..:|.:.::|     .|:|
Yeast   340 AKPRGLIVIRAAGQLDQLVEDYINDELEI-VSRINSIAIQENGTIEGGKLDNGEDVLAPYDHYKD 403

  Fly   234 LKAPKEASADDMVFLPFSSGTTGLPKGVMLSHNNITSNCEQVQASLPLDLMGPQNTLPGV----- 293
            .:.......|....|.|:||:.|:||||:..|.::......:.....|........|.|:     
Yeast   404 TRTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFNWMSKRFNLTENDKFTMLSGIAHDPI 468

  Fly   294 -----LPFFHIYGLTVVMLSKLGQGCRLATMPCFKPDDFMRSLDKYQGSILNLVPPIALFMINHP 353
                 .|.|....|.|.....:|...|||..           :.||..::.:|.|.:...:    
Yeast   469 QRDMFTPLFLGAQLYVPTQDDIGTPGRLAEW-----------MSKYGCTVTHLTPAMGQLL---- 518

  Fly   354 KLTQETAPHLKVVMSGAAPIG----QHDVERFLNKFPNTVFKQGYGMTEASPVVLL------TPE 408
             ..|.|.|..|  :..|..:|    :.|..|......|......||.||....|..      ..:
Yeast   519 -TAQATTPFPK--LHHAFFVGDILTKRDCLRLQTLAENCRIVNMYGTTETQRAVSYFEVKSKNDD 580

  Fly   409 GNKVYASTGVLPASTEAKIVPL------DGSDAKGVGPRTTGELCVRGPQVMAGYLNNDEANQVT 467
            .|.:.....|:||......|.|      |.:...|:|  ..||:.||...:..||....|.|:..
Yeast   581 PNFLKKLKDVMPAGKGMLNVQLLVVNRNDRTQICGIG--EIGEIYVRAGGLAEGYRGLPELNKEK 643

  Fly   468 FYPGNWL-----------------------------RSGDVAFYDEDGLFYITDRMKELIKVKGF 503
            |. .||.                             |:||:..|..:|......|..:.:|::||
Yeast   644 FV-NNWFVEKDHWNYLDKDNGEPWRQFWLGPRDRLYRTGDLGRYLPNGDCECCGRADDQVKIRGF 707

  Fly   504 QVPPAELEAVLRDHPKILE--------------AAVFGIPH--------EFNGEAPR-----AIV 541
            ::...|::..:..||.:.|              ...|.:|.        :|..:.|:     .||
Yeast   708 RIELGEIDTHISQHPLVRENITLVRKNADNEPTLITFMVPRFDKPDDLSKFQSDVPKEVETDPIV 772

  Fly   542 VLRQGEKASAEEISAYVAERVAHYKKLEGGVIFVDEVPKNPTGKILRRELK 592
            ....|....:::|..::.:|:|.| .:...::.:|::|.||.||:.:.:|:
Yeast   773 KGLIGYHLLSKDIRTFLKKRLASY-AMPSLIVVMDKLPLNPNGKVDKPKLQ 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdgyNP_001188590.1 CaiC 77..595 CDD:223395 131/630 (21%)
Firefly_Luc_like 99..587 CDD:213279 123/581 (21%)
LYS2NP_009673.1 alpha_am_amid 7..1379 CDD:274582 133/636 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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