DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdgy and LOC568883

DIOPT Version :9

Sequence 1:NP_001188590.1 Gene:pdgy / 32426 FlyBaseID:FBgn0027601 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_003199367.1 Gene:LOC568883 / 568883 -ID:- Length:640 Species:Danio rerio


Alignment Length:593 Identity:137/593 - (23%)
Similarity:226/593 - (38%) Gaps:140/593 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 KFLHYSPED-GYYKTSPFDPVTIPNVPLHEYVWRDFKKWERR--TAAVC--------------VI 98
            ||..|..:| .||            |.:....||...:.:|.  |...|              |.
Zfish    43 KFYPYFWDDLMYY------------VKVRRVGWRMMARMKRGVVTYLQCFELQATNIPDKPFIVF 95

  Fly    99 TDRQYTFAQMRDASAAFAVRLQTKFNLQKPDVLAICLPNLPEYPIATLGAIEAGLTVTTVNPVYT 163
            .|:..|:..:...|...|..|::...|:..|::|:.:.|..::....||..:.|..|..:|....
Zfish    96 EDQTLTYRDVDVRSNKLANVLKSHRGLKHGDIVALLMNNEADFICVWLGLCKLGCEVAFLNFNIK 160

  Fly   164 PDEIARQLTFSGAKFLVGTVSGFATLSQASKLVGRQIPIAVVRTSAEEA---LPEGAIDF---SE 222
            ...:...|...|||          ||...|.||          .|.:|.   |.:|.|:.   ||
Zfish   161 SQSLQHCLDRCGAK----------TLVIGSDLV----------KSLDEVLLMLTDGGIEIWVASE 205

  Fly   223 LTSTQNVR----YEDLKAPKEASAD--------DMVFLPFSSGTTGLPKGVMLSHNNITSNCEQV 275
            .:|.|||:    ..|..:|::...|        :.:|: |:||||||||...:||      .:.|
Zfish   206 SSSHQNVKTLLDKLDSASPEKPVVDAPQPNLMSNFLFI-FTSGTTGLPKAARISH------IKAV 263

  Fly   276 QASLPLDLMG--PQNTLPGVLPFFHIYG--LTVVMLSKLGQGCRLATMPCFKPDDFMRSLDKYQG 336
            .....|.|.|  ..:.:...||.:|:..  |.:....:||..|.|...  |....|.:...||..
Zfish   264 MCMAFLRLCGACADDKIYLTLPLYHMSASLLGIGGCIELGATCVLKRK--FSASQFWKDCLKYDI 326

  Fly   337 SILNLVPPIALFMINHPKLTQETAPHLKVVMSGAAPIG-QHDV-ERFLNKFPNTVFKQGYGMTEA 399
            ::...:..:..:::|.||..:|.|.::::    ||..| :.|| :.|:.:|.....::.||:|||
Zfish   327 TVFQYIGELCRYLVNQPKTLEEVAHNVRL----AAGSGLRADVWKEFIRRFGKIQIREAYGLTEA 387

  Fly   400 SPVVL-----LTPEGNKVYASTGVLPASTEAKIVPLDGSDAKGVGPRT-------TGELCVRGPQ 452
            |...:     :.|.|...|.:...||    .:.:..|        |:|       ||. |::..:
Zfish   388 SIGFVNYTDEIGPIGRASYFNKLNLP----FEFLKCD--------PQTFEPLRTDTGH-CIKVSK 439

  Fly   453 VMAGYLNNDEANQVTF------YPGN------------------WLRSGDVAFYDEDGLFYITDR 493
            ..||.|    ...|.|      |.|:                  :..:||:...|.....|..||
Zfish   440 GEAGLL----VAPVVFTNPFLGYAGDKAMSEKKLLRDVFKTGDVYFNTGDLMLQDHRDFVYFKDR 500

  Fly   494 MKELIKVKGFQVPPAELEAVLRDHPKILEAAVFGIP-HEFNGEAPRAIVVLRQGEKASAEEISAY 557
            :.:..:.||..|...|:..||.....:|:..|:|:. ..:.|.|..|.|||:.|.:...:.:.::
Zfish   501 IGDTFRWKGENVSTTEVSEVLGSLDFLLDVNVYGVTVPGYEGRAGMAAVVLKDGHELDGKRVYSH 565

  Fly   558 VAERVAHY 565
            :...:..|
Zfish   566 LLHTLPPY 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdgyNP_001188590.1 CaiC 77..595 CDD:223395 130/566 (23%)
Firefly_Luc_like 99..587 CDD:213279 124/528 (23%)
LOC568883XP_003199367.1 PRK08279 80..640 CDD:236217 125/544 (23%)
AFD_class_I 97..630 CDD:302604 124/527 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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