DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdgy and acs-2

DIOPT Version :9

Sequence 1:NP_001188590.1 Gene:pdgy / 32426 FlyBaseID:FBgn0027601 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_506869.1 Gene:acs-2 / 3565680 WormBaseID:WBGene00009221 Length:618 Species:Caenorhabditis elegans


Alignment Length:636 Identity:154/636 - (24%)
Similarity:257/636 - (40%) Gaps:104/636 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 RSITTNRRQRTTSTASAQRERTQSVSETDKF------LHYSPEDGY-YKTSPFDPVTIPNVPL-H 78
            |||..:||.....|::.....|.::..||..      :|....:.| :.||        |:|| :
 Worm     2 RSILVSRRFAHVLTSTHAAPSTSNIPTTDSHHLTHPSVHRQHTNSYIHGTS--------NIPLRN 58

  Fly    79 EYVWRDFKKWERRTAAVCVITDRQY----------TFAQMRDASAAFAVRLQTKFNLQKPDVLAI 133
            |.:.:..:....|      :.|:::          |:.:........|..|.| ..|:|.|.:.:
 Worm    59 ETLGQTLRNTTER------VPDKEFCVFSKYPIRKTYEEFYHDVRQMAASLYT-LGLEKGDRVGV 116

  Fly   134 CLPNLPEYPIATLGAIEAGLTVTTVNPVYTPDEIARQLTFSGAKFLVGTVSGFA----------- 187
            ..||..|:.:.......||:....|||.|..:|:...:..:|.|.|      ||           
 Worm   117 WGPNYYEWVVLQYACAFAGVIQVNVNPHYLHEELRFVMRKTGMKVL------FAPKRHKHSNYVH 175

  Fly   188 TLSQASKLVGRQIP-IAVVRTSAEEALPE--------------GAIDFSELT----STQNVRYED 233
            |:.:|...:.|..| :..:::   ..:||              ||..:|:|.    |.:..:.||
 Worm   176 TMLEAMPEMRRGQPGVGHIKS---HDIPELRHIVLYGDDVPVHGAWVYSDLIHAAGSAERAKLED 237

  Fly   234 LKAPKEASADDMVFLPFSSGTTGLPKGVMLSHNNITSNCEQVQASLPLDLMGPQNTLPGVLPFFH 298
            :  .::...|:.|.:.|:|||||.|||..|:|..:.:|.......|..|....:..:|.  |.:|
 Worm   238 M--DRKLRPDEPVNMQFTSGTTGHPKGATLTHFGLNNNAYFAGIRLGWDREDHRICIPN--PLYH 298

  Fly   299 IYGLTVVMLSKLGQGCRLATMP--CFKPDDFMRSLDKYQGSILNLVPPIALFMINHPKLTQETAP 361
            .:|..|.:::.:..| :....|  .:...|...::...:.:.:...|.:.:.::..|.:.|....
 Worm   299 CFGCAVGVINAVNHG-QTVVFPSKSYHVPDIFEAIQNEKCTTMFGTPTMFIDVLKSPLMKQFDIS 362

  Fly   362 HLKVVMSGAAPIGQHDVERFLNKFPNTVFKQGYGMTEASPVVLLTP---EGNKVYASTGVLPAST 423
            .|:..:.|.||......|:.:.:...|.|...||.||.||:|.::.   :..:...|.|.:....
 Worm   363 SLRGGVIGGAPCPMALCEKMVKEMRMTDFSVIYGSTETSPLVTMSELHVDPFERIKSVGSVMPHQ 427

  Fly   424 EAKIVPLDGSDAKGVGPRT--TGELCVRGPQVMAGYLNNDEANQVTFYPGNWLRSGDVAFYDEDG 486
            |..||     |..||...|  .|||..||...|.||..:.:...:......|.:|||.|..:|||
 Worm   428 ELAIV-----DEFGVPVPTGAKGELWSRGYSTMLGYWADHDKTNLAITRDRWYKSGDTATMNEDG 487

  Fly   487 LFYITDRMKELIKVKGFQVPPAELEAVLRDHPKILEAAVFGIPHEFNGEAPRAIVVLRQGE--KA 549
            ...|..|.:::|...|..|.|.|:|..|.....:.:|.|.|:|.:..||...|.|.||..:  |.
 Worm   488 TINIVGRTRDMIVKGGENVYPTEIEQFLHKLDYVADAHVVGVPDDRYGENICAWVRLRVEDEGKI 552

  Fly   550 SAEEISAYVAERVAHYK-------KLEGGVIFVDEVPKNPTGKILRRELKE 593
            :||.|.......:||||       |.|      .|.|...:||:.:.|:::
 Worm   553 TAEHIKKACKRGMAHYKVPKYVLIKKE------SEFPLTISGKVKKFEIQK 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdgyNP_001188590.1 CaiC 77..595 CDD:223395 139/574 (24%)
Firefly_Luc_like 99..587 CDD:213279 135/543 (25%)
acs-2NP_506869.1 PRK08315 46..609 CDD:236236 144/592 (24%)
FACL_like_2 244..595 CDD:213284 99/364 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.815465 Normalized mean entropy S2257
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100107
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X154
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.660

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