DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdgy and dip-2

DIOPT Version :9

Sequence 1:NP_001188590.1 Gene:pdgy / 32426 FlyBaseID:FBgn0027601 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001293298.1 Gene:dip-2 / 3565539 WormBaseID:WBGene00017885 Length:1681 Species:Caenorhabditis elegans


Alignment Length:617 Identity:119/617 - (19%)
Similarity:210/617 - (34%) Gaps:158/617 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 QYTFAQMRDASAAFAVRLQTKF---------NLQ-KP-DVLAICLPNLP--EYPIATLGAIEAGL 153
            |.|:.::...:...|..|.||.         |:. || |.:|:..||..  .:..|..|.::||:
 Worm   440 QLTYGKLHSRAGKVAYMLLTKTVQVNKDGSKNVMCKPGDRVALIYPNTQPLHFLAAFYGCLQAGV 504

  Fly   154 TVTTVNPVYTPDEIARQLTFSGAKFLVGTVSGFATLSQASKLVGRQIPIAVVRTSAEEALPEGA- 217
            ...   ||..|.. .|:...:...||:|.......|:..|...|  :| ..|.||:..:.|.|: 
 Worm   505 IPV---PVEMPSS-KREAGIAQLGFLLGNCGVKVALTSESCYKG--LP-KKVNTSSTFSAPSGSN 562

  Fly   218 ---------IDFS-------ELTSTQNVRYEDLKAPKEASADDMVFLPFSSGTTGLPKGVMLSHN 266
                     :||.       .:|...:....|..||...:.:.:.::.:::|..|..||..::..
 Worm   563 SLTGTSSEIVDFRGWPRLWWAVTEHMSKPSRDWTAPPRLADETIAYIEYTTGNDGTVKGCCVTRQ 627

  Fly   267 NITSNCEQVQASLPLDLMGPQNTLPGVLPFFHIYGLTVVMLSKLGQGCRLATMPC----FKPDDF 327
            .:.::|..:..::...   ...|:..|:.|....||...:|:.:..|.::..:|.    ..|..:
 Worm   628 AVFAHCRALTTAMEYK---EDETMVCVVDFKREVGLWHAILASIFNGMKVIFVPYSLMKMNPATW 689

  Fly   328 MRSLDKYQGSILNLVPP-----IALFMINHPKLTQETAPHLKVVMSGAAPIGQHDVERFLNKFPN 387
            |..:.|||.:.. ||..     ..|...:|..::..:...| :|..||.|......:.|...|..
 Worm   690 MHMVSKYQATTA-LVKSRDLHWALLATRDHKDISLASLRTL-LVADGANPWSLSSCDAFAAAFTP 752

  Fly   388 TVF-------------------------------KQGYG---MTEASPVVLLTPEGNKVYAST-- 416
            :.:                               :.|.|   |:..|..|:.....|.:.:.|  
 Worm   753 SPYSLRPDAMCPCAGSSETGTISIRRRGNAQLGSQSGRGILSMSALSHCVVRVDTENSLTSLTLQ 817

  Fly   417 --GVLPASTEAKIVPLDGSD----AKGVGPRTTGELCVRGPQVMAGYLNNDEANQVTFY------ 469
              |.:.|.....:..:|||:    |..:     ||:||........|...|.....||.      
 Worm   818 DAGQIVAGAVVVVTAIDGSNRLCQADEI-----GEICVSANSTAQLYWALDGQTHHTFKVEPVGE 877

  Fly   470 ------PGNWLRSGDVAFYDEDGLFYITDRMKELIKVKG------------FQVPPAEL------ 510
                  ...::|||.:.|...||:.::..|.:.|:.|.|            ..|.|.:.      
 Worm   878 YGKLIGAVRYVRSGLIGFMGPDGMVFVVARRQSLLAVSGRYHSADDIIATVLAVEPMKFVYRGRI 942

  Fly   511 ----EAVLRDHPKILEAAVFGIPHEFNGEAPRAIVVLRQGEKASAEEISAYVAERVAHYKKLEGG 571
                .:||||.                    |.::|..|....|.||...::...:.....:...
 Worm   943 CVFSTSVLRDE--------------------RIVIVAEQKPNCSEEEAFDWITRVLRAIDTIHQV 987

  Fly   572 VIF------VDEVPKNPTGKILRRELKEKFSD 597
            .|:      .:.:||.|.|.:...|.|::|.:
 Worm   988 GIYCCALVPANHLPKTPLGGVHVSETKQRFEN 1019

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdgyNP_001188590.1 CaiC 77..595 CDD:223395 118/613 (19%)
Firefly_Luc_like 99..587 CDD:213279 116/605 (19%)
dip-2NP_001293298.1 DMAP_binding 4..114 CDD:368923
Dip2 427..1027 CDD:341231 119/617 (19%)
Dip2 1096..1677 CDD:341231
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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