DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdgy and Acsm4

DIOPT Version :9

Sequence 1:NP_001188590.1 Gene:pdgy / 32426 FlyBaseID:FBgn0027601 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_859046.1 Gene:Acsm4 / 353317 RGDID:727928 Length:580 Species:Rattus norvegicus


Alignment Length:548 Identity:125/548 - (22%)
Similarity:217/548 - (39%) Gaps:115/548 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 QYTFAQMRDASAAFAVRLQTKFNLQKPDVLAICLPNLPEYPIATLGAIEAGLTVTTVNPVYTPDE 166
            :::|.::...|...|..|.....||:.|.:|:.||.:||:.:..:..:..||.........|..:
  Rat    88 KWSFQELGSLSRKAANVLTKPCGLQRGDRVAVILPRIPEWWLINVACMRTGLVFMPGTIQLTRKD 152

  Fly   167 IARQLTFSGAKFLVGTVSGFATLSQASKLVGRQIPIAVVRTSAEEALPEGAIDFSELTSTQNVRY 231
            |..:|..|.||.:|.:    ..::.|...:..:.|....:........:|.:.|.||..:.:   
  Rat   153 ILYRLQASKAKCIVAS----EEVAPAVDSIASECPNLKTKLLVSPHRWDGWLSFQELLQSAS--- 210

  Fly   232 EDLKAPKEASADDMVFLPFSSGTTGLPKGVMLSHNNITSNCEQVQASLPL--------------- 281
            |:....:..|.:.|. :.|:|||||.||  |..|:         |:||.:               
  Rat   211 EEHNCVQTGSQEPMA-IYFTSGTTGSPK--MAQHS---------QSSLGIGYALCGRYWLDLTSS 263

  Fly   282 DLMGPQNT---------------LPGVLPFFHIYGLTVVMLSKLGQGCRLATMPCFKPDDFMRSL 331
            |:|...:.               |.|...|.|                |:|.   |..|.|:.:|
  Rat   264 DIMWNMSDTGWIKAAIGSVFSTWLRGACVFVH----------------RMAQ---FNTDTFLDTL 309

  Fly   332 DKYQGSILNLVPPIALFMINHPKLTQETAPHLKVVMSGAAPIGQHDVERFLNKFPNTVFKQGYGM 396
            ..|..:.|...|.:...::.. .|.:.....|:..::|..|:....:|::..:....:: :|||.
  Rat   310 TSYPITTLCSAPTVYRMLVQQ-DLKRYQFKRLRHCLTGGEPLNPEVLEQWKAQTGLELY-EGYGQ 372

  Fly   397 TEASPVVLLTPEGNKVYAST-----------------GVLPASTEAKIVPLDGSDAKGVGPRTTG 444
            ||.. ::....:|.::...:                 .:||:..|.:|....|||.         
  Rat   373 TEVG-IICANRKGEEIKPGSMGKGVVPYDVQIIDEHGNILPSGKEGEIALRLGSDR--------- 427

  Fly   445 ELCVRGPQVMAGYLNNDEANQVTFYPGNWLRSGDVAFYDEDGLFYITDRMKELIKVKGFQVPPAE 509
            ..|     ..:.|::|.|....|. ..|:..:||....|:||..:...|..::|...|:::.|.|
  Rat   428 PFC-----FFSEYVDNPEKTDATI-RRNFYITGDRGVMDDDGYLWFVGRADDVIISSGYRIGPFE 486

  Fly   510 LEAVLRDHPKILEAAVFGIPHEFNGEAPRAIVVLRQGEKAS-----AEEISAYVAERVAHYK--- 566
            :|:.|.:||.::|:||...|....||..:|.:||....|:|     ..|:..:|....|.||   
  Rat   487 VESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPFKSSNREKLTAELQDHVKNSTAPYKYPR 551

  Fly   567 KLEGGVIFVDEVPKNPTGKILRRELKEK 594
            |:|    ||.|:||..||||.|..|:::
  Rat   552 KVE----FVQELPKTITGKIKRNVLRDQ 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdgyNP_001188590.1 CaiC 77..595 CDD:223395 125/548 (23%)
Firefly_Luc_like 99..587 CDD:213279 122/539 (23%)
Acsm4NP_859046.1 MACS_euk 48..577 CDD:341251 125/548 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D333840at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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