DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdgy and Acsm3

DIOPT Version :9

Sequence 1:NP_001188590.1 Gene:pdgy / 32426 FlyBaseID:FBgn0027601 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_006230168.1 Gene:Acsm3 / 24763 RGDID:62086 Length:581 Species:Rattus norvegicus


Alignment Length:541 Identity:126/541 - (23%)
Similarity:222/541 - (41%) Gaps:100/541 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 QYTFAQMRDASAAFAVRLQTKFNLQKPDVLAICLPNLPEYPIATLGAIEAGLTVTTVNPVYTPDE 166
            :::|.::...|..||..|....:||:.|.:.:.||.:||:.:|.:..:..|..:.......|..:
  Rat    88 RWSFEELGSLSRKFANILTEACSLQRGDRVMVILPKIPEWWLANVACLRTGTVLIPGTTQLTQKD 152

  Fly   167 IARQLTFSGAKFLVGTVSGFATLSQASKLVGRQIPIAVVRTSAEEALPEGAIDFSELTSTQNVR- 230
            |..:|..|.:|.::..    .||:.|         :.:|....|..       .|:|..:|:.| 
  Rat   153 ILYRLQSSKSKCIITD----DTLAPA---------VDIVAAKCENL-------HSKLIVSQHSRE 197

  Fly   231 -YEDLKAPKEASAD----------DMVFLPFSSGTTGLPKGVMLSHNNITSNCEQVQASLPLDLM 284
             :.:||...:.::|          :::.:.|:|||||.||.:..:|::..... .|.....|||:
  Rat   198 GWGNLKEMMKYASDSHTCVDTKHNELMAIYFTSGTTGPPKMIGHTHSSFGLGL-SVNGRFWLDLI 261

  Fly   285 GPQ---NT-----------------LPGVLPFFHIYGLTVVMLSKLGQGCRLATMPCFKPDDFMR 329
            ...   ||                 ..|...|.|.                   :|.|.....::
  Rat   262 ASDVMWNTSDTGWAKSAWSSVFSPWTQGACVFAHY-------------------LPRFDSTSILQ 307

  Fly   330 SLDKYQGSILNLVPPIALFMINHPKLTQETAPHLKVVMSGAAPIGQHDVERFLNKFPNTVFKQGY 394
            :|.|:..::....|.....:|.:..........||..:|...||....:|::..|....:: :||
  Rat   308 TLSKFPITVFCSAPTAYRMLIQNDITRSYKFNSLKHCVSAGEPINPEVMEQWKKKTGLDIY-EGY 371

  Fly   395 GMTEASPVVLLTPEGNKVYASTGVLPASTEAKIVPLDGSDAKGVGPRTTGELCVRGPQVM----- 454
            |.||   .||:......:....|.:...:.|..|.:...:...:.|...|::.|   ||:     
  Rat   372 GQTE---TVLICGNFKGMKIKPGSMGKPSPAFNVEILDENGTILPPGQEGDIAV---QVLPDRPF 430

  Fly   455 ---AGYLNNDEANQVTFYPGNWLRSGDVAFYDEDGLFYITDRMKELIKVKGFQVPPAELEAVLRD 516
               ..|::|......|. .||:..:||..:.||||.|:...|..::|...|:::.|.|:|:.|.:
  Rat   431 GLFTHYVDNPSKTASTL-RGNFYITGDRGYMDEDGYFWFVARSDDVILSSGYRIGPFEVESALIE 494

  Fly   517 HPKILEAAVFGIPHEFNGEAPRAIVVLR-----QGEKASAEEISAYVAERVAHYK---KLEGGVI 573
            ||.|.|:||...|....||..:|.:||.     ..::...:||..:|.:..|.||   |:|    
  Rat   495 HPSIAESAVVSSPDPIRGEVVKAFIVLNPDYKLHDQEQLKKEIQEHVKKTTAPYKYPRKIE---- 555

  Fly   574 FVDEVPKNPTGKILRRELKEK 594
            |::|:||..:||:.|.||:.|
  Rat   556 FIEELPKTVSGKVKRNELRRK 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdgyNP_001188590.1 CaiC 77..595 CDD:223395 126/541 (23%)
Firefly_Luc_like 99..587 CDD:213279 122/532 (23%)
Acsm3XP_006230168.1 Acs 45..575 CDD:223442 125/538 (23%)
AFD_class_I 48..578 CDD:302604 126/541 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D333840at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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