DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdgy and Acsm4

DIOPT Version :9

Sequence 1:NP_001188590.1 Gene:pdgy / 32426 FlyBaseID:FBgn0027601 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_848501.1 Gene:Acsm4 / 233801 MGIID:2681844 Length:580 Species:Mus musculus


Alignment Length:540 Identity:126/540 - (23%)
Similarity:218/540 - (40%) Gaps:99/540 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 QYTFAQMRDASAAFAVRLQTKFNLQKPDVLAICLPNLPEYPIATLGAIEAGLTVTTVNPVYTPDE 166
            :::|.::...|...|..|.....||:.|.:|:.||.:||:.:..:..:..||.........|..:
Mouse    88 KWSFQELGSLSRKAANVLTKPCGLQRGDRVAVILPRIPEWWLINVACMRTGLVFMPGTIQLTRKD 152

  Fly   167 IARQLTFSGAKFLVGTVSGFATLSQASKLVGRQIPIAVVRTSAEEALPEGAIDFSELTSTQNVRY 231
            |..:|..|.||.:|.:    ..::.|...:..:.|....:........:|.::|.||..:.:..:
Mouse   153 ILYRLQASKAKCIVAS----EEVAPAVDSIVSECPSLKTKLLVSPHHWDGWLNFQELLQSASEEH 213

  Fly   232 EDLKAPKEASADDMVFLPFSSGTTGLPKGVMLSHNNITSNCEQVQASLPL--------------- 281
            ..:    |..:.:.:.:.|:|||||.||  |..|:         |.||.:               
Mouse   214 NCV----ETGSQEPMAIYFTSGTTGSPK--MAQHS---------QGSLGIGYTLCGRYWLDLTSS 263

  Fly   282 DLMGPQNT---------------LPGVLPFFHIYGLTVVMLSKLGQGCRLATMPCFKPDDFMRSL 331
            |:|...:.               |.|...|.|                |:|.   |..|.|:.:|
Mouse   264 DIMWNMSDTGWIKAAIGSVFSTWLRGACVFVH----------------RMAQ---FDTDIFLDTL 309

  Fly   332 DKYQGSILNLVPPIALFMINHPKLTQETAPHLKVVMSGAAPIGQHDVERFLNKFPNTVFKQGYGM 396
            ..|..:.|...|.:...:: ...|.:.....|:..::|..|:....:|::..:....:: :|||.
Mouse   310 TTYPITTLCSAPTVYRMLV-QKDLKRYQFKRLRHCLTGGEPLNPEVLEQWKMQTGLELY-EGYGQ 372

  Fly   397 TEASPVVLLTPEGNKVYASTGVLPASTEAKIVPLDGS--DAKG--VGPRTTGELCVRGPQ----- 452
            ||.. ::....:|.      .:.|.|....:||.|..  |..|  :.....||:.:|...     
Mouse   373 TEVG-IICANRKGE------AIKPGSMGKGVVPYDVQIIDENGNILPSGKEGEIALRLKSDRPFC 430

  Fly   453 VMAGYLNNDEANQVTFYPGNWLRSGDVAFYDEDGLFYITDRMKELIKVKGFQVPPAELEAVLRDH 517
            ..:.|::|.|....|. ..|:..:||....|:||.|:...|..::|...|:::.|.|:|:.|.:|
Mouse   431 FFSEYVDNPEKTDATI-RRNFYVTGDRGVMDDDGYFWFVGRADDVIISSGYRIGPFEVESALIEH 494

  Fly   518 PKILEAAVFGIPHEFNGEAPRAIVVLRQGEKAS-----AEEISAYVAERVAHYK---KLEGGVIF 574
            |.::|:||...|....||..:|.:||....|.|     ..|:..:|....|.||   |:|    |
Mouse   495 PAVVESAVVSSPDPIRGEVVKAFIVLAAPYKCSNREKLTAELQDHVKNSTAPYKYPRKVE----F 555

  Fly   575 VDEVPKNPTGKILRRELKEK 594
            |.|:||..||||.|..|:::
Mouse   556 VQELPKTITGKIKRNVLRDQ 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdgyNP_001188590.1 CaiC 77..595 CDD:223395 126/540 (23%)
Firefly_Luc_like 99..587 CDD:213279 123/531 (23%)
Acsm4NP_848501.1 MACS_euk 48..577 CDD:213294 126/540 (23%)
Acs 49..576 CDD:223442 126/540 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D333840at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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