DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdgy and acsf3

DIOPT Version :9

Sequence 1:NP_001188590.1 Gene:pdgy / 32426 FlyBaseID:FBgn0027601 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001121382.2 Gene:acsf3 / 100158470 XenbaseID:XB-GENE-964811 Length:589 Species:Xenopus tropicalis


Alignment Length:650 Identity:156/650 - (24%)
Similarity:261/650 - (40%) Gaps:137/650 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 RMRSATAFGSAATRSITTNRRQRTTSTASAQRERTQS--------VSETDKFLHYSPEDGYYKTS 65
            :||.|:..|          |...|.|.....:.||::        ||::....|..|   .:..:
 Frog    11 QMRVASFLG----------RFLYTWSCVRGVQVRTRTPLHSCYFHVSKSSTSSHVVP---VFSRA 62

  Fly    66 PFDPVTIPNVPLHEYVWRDFKKWERRTAAVCVITDR--QYTFAQMRDASAAFAVRLQTKFNLQ-- 126
            ||                    :..|||.|    |:  ::|:.::...|.|.     :|..:|  
 Frog    63 PF--------------------FSERTAMV----DQHGKHTYKELYIRSQAL-----SKMIIQLL 98

  Fly   127 -------KPDVLAICLPNLPEYPIATLGAIEAGLTVTTVNPVYTPDEIARQLTFSGAKFLVGTVS 184
                   .|:.::...||...|.:.......:|.....:...:.|.|:...|..|.:..:|...|
 Frog    99 GHPSRNNPPERVSFLCPNNSSYVVCQWAVWMSGAIAVPLYKSHPPSELKYILQDSQSALVVAEES 163

  Fly   185 GFATLSQASKLVGRQIPIAVVRTSAEEALPEGAIDFSELTSTQNVRYEDLKAP-KEASADDMVFL 248
             :|.:...   :..|:.|.|:..|..::|..     |||  .|.:....|:.. |:..|    .:
 Frog   164 -YANVMNP---LAEQLGIPVLTMSGSQSLHP-----SEL--LQEIEVSKLELDWKDRGA----MI 213

  Fly   249 PFSSGTTGLPKGVMLSHNNITSNCEQVQASLPLDLMGPQNTLPGVLPFFHIYGLTVVMLSKLGQG 313
            .::|||||.||||:.:|.|:.|   .|.|.:.......::::..|||..|::|:...::..|..|
 Frog   214 IYTSGTTGRPKGVLSTHYNLYS---MVSALVTEWGWTKEDSILHVLPLHHVHGVVNKLMCPLWVG 275

  Fly   314 CRLATMPCFKP----DDFMRSLDKYQGSILNLVPPIALFMIN-------HPKLTQ----ETAPHL 363
            .....:|.|.|    ..|:|. |....:|...||.|...:|:       |..:.:    .....:
 Frog   276 ATCVMLPDFCPQKVWQHFLRR-DAPSINIFMAVPTIYSKLISYYEQHFTHSNVREFVRAACQERI 339

  Fly   364 KVVMSGAAPIGQHDVERFLNKFPNTVFKQGYGMTEASPVVLLTPEGNKVYASTGVLPASTEAKIV 428
            ::::||::.:....:||:.....:|:.:: |||||....:.....|.:|..:.|          .
 Frog   340 RLMVSGSSALPVPILERWQEITGHTLLER-YGMTEIGMALTNPLHGPRVPGAVG----------N 393

  Fly   429 PLDGSDAKGV--GPR-------------------------TTGELCVRGPQVMAGYLNNDEANQV 466
            ||.|.:.:.|  .||                         ..|||.|:||.|...|.|.....|.
 Frog   394 PLPGVEVRTVTQNPRKEGTSYTVHAHGDSTGTMVSVGLENREGELQVQGPAVFKEYWNKPHETQE 458

  Fly   467 TFYPGNWLRSGDVAFYDEDGLFYITDRMK-ELIKVKGFQVPPAELEAVLRDHPKILEAAVFGIPH 530
            .|....|.::||.|.| :||.::|..|.. ::||..|::|...|:|..|..||.|.:.||.|.|.
 Frog   459 AFTSDGWFKTGDTAVY-KDGTYWILGRTSVDIIKSGGYKVSALEVERHLLGHPSITDVAVIGAPD 522

  Fly   531 EFNGEAPRAIVVLRQGEKASAEEISAYVAERVAHYKKLEGGVIFVDEVPKNPTGKILRRELKEKF 595
            ...|:...|||.||.|...|.:|:..:....:|.| .:...:|.|:|:|:|..|||.:::|...|
 Frog   523 VTWGQRVAAIVKLRDGHALSLQELKEWARAVMAPY-CIPAELIRVEEIPRNQMGKINKKQLLVHF 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdgyNP_001188590.1 CaiC 77..595 CDD:223395 140/572 (24%)
Firefly_Luc_like 99..587 CDD:213279 134/542 (25%)
acsf3NP_001121382.2 CaiC 61..582 CDD:223395 141/581 (24%)
MCS 67..579 CDD:213307 139/552 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R434
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

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