DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9503 and Chdh

DIOPT Version :9

Sequence 1:NP_572987.1 Gene:CG9503 / 32424 FlyBaseID:FBgn0030598 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_942026.1 Gene:Chdh / 290551 RGDID:735166 Length:599 Species:Rattus norvegicus


Alignment Length:589 Identity:220/589 - (37%)
Similarity:301/589 - (51%) Gaps:84/589 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 DHYDFIVIGAGSAGAVVANRLTEVENWNVLLLEAGGDETELTDVPLMAGYLQL------------ 110
            |.|.|||:||||||.|:||||||..|..|||||||..:       |:.|..:|            
  Rat    44 DEYTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKD-------LLMGSKRLQWKIHMPAALVA 101

  Fly   111 ----SKIDWQYKTEPSGTSCLAMQGGRCNWPRGKVLGGSSVLNYMLYLRGSKHDYDNWEAMGNPS 171
                .|.:|.|.||...    .:.|....||||:|.||||.||.|:|:||...||:.|...|...
  Rat   102 NLCDDKYNWYYHTEAQP----GLDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEG 162

  Fly   172 WSYRDALYYFKKSEDNTNQYLANTPYHATGGYLTVGEAPYHTPLAASFVEAGVEMGYE-NRDLNG 235
            |.|...|.||:|::.:.   |....|....|.|.|.....:.||..:|::|..:.||. ..|:||
  Rat   163 WDYAHCLPYFRKAQKHE---LGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNG 224

  Fly   236 EKMTGFMIAQGTTRRGSRCSTSKAFLRPARLRPNLHISMNSHVTRIMIDPVTKLAFGVEFVKDQK 300
            .:..||.....|..:|.|.||:.|:||||..||||...:.:.|:|::.:...  |.|||::||.:
  Rat   225 FQQEGFGWMDMTIHQGKRWSTASAYLRPALSRPNLRAEVQTLVSRVLFEGTR--AVGVEYIKDGQ 287

  Fly   301 LYHVRATKEVVLSGGSVNSPQLLMLSGVGPRKELAKHRIPLIKEL-SVGENLQDHIGLGGLTFLV 364
            .:....::||:||||::||||||||||||...:|.|..||::..| .||:|||||:.: .:....
  Rat   288 SHKAYVSREVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEI-YIQHAC 351

  Fly   365 NQPVSIVENRFHTMSTVLQYAVFGQGPLTILGGVEGLAYVNTK---YANSSLDWPDIEFHFVSGS 426
            .||:::     |:....|:....|...|....|....|::.|.   .:...:..|||:|||:...
  Rat   352 TQPITL-----HSAQKPLRKVCIGLEWLWRFTGDGATAHLETGGFIRSRPGVPHPDIQFHFLPSQ 411

  Fly   427 TNSDGGSQLRKAHGLTDAFYRAVFEPINNRDAWSIIPMLLRPRSVGNIRLRSGNPFDYPYIFPNY 491
            ....|    ||.               ..::|:.:....:|..|||.::|||.||.|:|.|.|||
  Rat   412 VIDHG----RKP---------------TQQEAYQVHVGTMRATSVGWLKLRSTNPQDHPMINPNY 457

  Fly   492 LTDDFDMKTLIEGVKI--------AVALSRTKAMQRFGSRISSIRWPGCEQVPLFTDAFWECMVR 548
            |:.:.|::...:.||:        |.|..|.|.:|. ||.:.|.:         ..|||    ||
  Rat   458 LSTETDVEDFRQCVKLTREIFAQEAFAPFRGKELQP-GSHVQSDK---------EIDAF----VR 508

  Fly   549 RYTSTIYHPVGTCKMGPYWDKDAVVDAKLRVYGIRGLRVIDASIMPKLVSANTNAPVIMIAEKGS 613
            ....:.|||..|||||...|..||||.:.||.|:..||||||||||.:||.|.|||.||||||.:
  Rat   509 AKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGNLNAPTIMIAEKAA 573

  Fly   614 DMIK 617
            |:||
  Rat   574 DVIK 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9503NP_572987.1 PRK02106 59..617 CDD:235000 217/586 (37%)
NADB_Rossmann 122..354 CDD:304358 92/233 (39%)
GMC_oxred_C 468..611 CDD:282984 67/150 (45%)
ChdhNP_942026.1 PRK02106 45..591 CDD:235000 219/588 (37%)
NADB_Rossmann 49..>151 CDD:304358 47/112 (42%)
GMC_oxred_N 121..344 CDD:279121 94/227 (41%)
GMC_oxred_C 435..572 CDD:282984 68/150 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 244 1.000 Domainoid score I2129
eggNOG 1 0.900 - - E1_COG2303
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 342 1.000 Inparanoid score I2269
OMA 1 1.010 - - QHG52181
OrthoDB 1 1.010 - - D173099at33208
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm44531
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.870

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