DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9503 and chdh

DIOPT Version :9

Sequence 1:NP_572987.1 Gene:CG9503 / 32424 FlyBaseID:FBgn0030598 Length:626 Species:Drosophila melanogaster
Sequence 2:XP_002663301.2 Gene:chdh / 100331020 ZFINID:ZDB-GENE-120111-1 Length:585 Species:Danio rerio


Alignment Length:623 Identity:220/623 - (35%)
Similarity:316/623 - (50%) Gaps:86/623 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 TSNSWFIPMLMAAVAYFQYEEIIDPESKPSDVGGDDILDHYDFIVIGAGSAGAVVANRLTEVENW 84
            :|::..:..|.:.:.:.:|...:..::.||          |.::::||||||.|:|:||||..:.
Zfish     5 SSSTRLMSSLCSPLLHHRYISTVVNKNTPS----------YSYVIVGAGSAGCVLASRLTENPSD 59

  Fly    85 NVLLLEAGGDETELTDVPL-----MAGYLQLSKID----WQYKTEPSGTSCLAMQGGRCNWPRGK 140
            :|||||||..:..|....|     |...|..:..|    |.|.|.|..    .|......||||:
Zfish    60 SVLLLEAGPKDKHLGSTRLSWKIHMPAALTYNLCDDRYNWFYHTLPQA----HMDDRVMYWPRGR 120

  Fly   141 VLGGSSVLNYMLYLRGSKHDYDNWEAMGNPSWSYRDALYYFKKSEDNTNQYLANTPYHATGGYLT 205
            |.||||.||.|:|:||...||:.|::.|...|:|...|.||:|::.:.   |....|....|.|.
Zfish   121 VWGGSSSLNAMVYIRGHAEDYNRWQSEGADGWNYDHCLPYFRKAQTHE---LGPDRYRGGDGPLH 182

  Fly   206 VGEAPYHTPLAASFVEAGVEMGYE-NRDLNGEKMTGFMIAQGTTRRGSRCSTSKAFLRPARLRPN 269
            |.......||..:|::||.:.||. ..|:||.:..|......|..:|.|.||:.|:||||..|||
Zfish   183 VSRGKTQNPLHYAFIQAGQQAGYPYTEDMNGFQQEGVGWMDMTIHKGQRWSTASAYLRPALSRPN 247

  Fly   270 LHISMNSHVTRIMIDPVTKLAFGVEFVKDQKLYHVRATKEVVLSGGSVNSPQLLMLSGVGPRKEL 334
            |...:...|||::.|...  |.|||:.::.::..|.|.|||:||||::||||||:|||||...||
Zfish   248 LSTEVRCMVTRVLFDGAR--ARGVEYQQNGQIKKVFAEKEVILSGGAINSPQLLLLSGVGNADEL 310

  Fly   335 AKHRIPLIKEL-SVGENLQDHIGLGGLTFLVNQPVSIVENRFHTMSTVLQYAVFGQGPLTILG-G 397
            ....||:::.| .||.|||||:.| .:.....||:::..               .|.||.:|. |
Zfish   311 KTLDIPVVQHLPGVGCNLQDHLEL-YVQHACTQPITLYR---------------AQKPLQMLKIG 359

  Fly   398 VEGL----AYVNTKYANS--------SLDWPDIEFHFVSGSTNSDGGSQLRKAHGLTDAFYRAVF 450
            :|.|    .|..|.:..|        .:..|||:|||:.......|     :.....:||...|.
Zfish   360 LEWLLKFTGYGATAHLESGGFIRSRPDVPHPDIQFHFLPSQVIDHG-----RVSSKIEAFQVHVG 419

  Fly   451 EPINNRDAWSIIPMLLRPRSVGNIRLRSGNPFDYPYIFPNYLTDDFDMKTLIEGVKIAVALSRTK 515
                        ||  |..|||.::|:|.:|.|:|.:.||||:.:.|:....|.|::...:...:
Zfish   420 ------------PM--RSTSVGWLKLKSKDPRDHPILQPNYLSTETDVLEFRECVRLTREIFAQQ 470

  Fly   516 AMQRFGSRISSIRWPGCEQVP-LFTDAFWECMVRRYTSTIYHPVGTCKMGPYWDKDAVVDAKLRV 579
            |...|       |.|..:..| :.:||..:..||:...:.|||..|||||...|:.|||..:|||
Zfish   471 AFDEF-------RGPEVQPGPAVQSDAEIDAFVRQKADSAYHPSCTCKMGRPEDRMAVVSPELRV 528

  Fly   580 YGIRGLRVIDASIMPKLVSANTNAPVIMIAEKGSDMIK 617
            :|:.||||:|||:||.:||.|.|||.||||||.:|.||
Zfish   529 FGVEGLRVVDASVMPSMVSGNLNAPTIMIAEKAADAIK 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9503NP_572987.1 PRK02106 59..617 CDD:235000 213/582 (37%)
NADB_Rossmann 122..354 CDD:304358 94/233 (40%)
GMC_oxred_C 468..611 CDD:282984 59/143 (41%)
chdhXP_002663301.2 PRK02106 30..585 CDD:235000 217/598 (36%)
NADB_Rossmann 38..>69 CDD:304358 19/30 (63%)
GMC_oxred_N 110..333 CDD:279121 95/227 (42%)
GMC_oxred_C 424..561 CDD:282984 60/143 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 241 1.000 Domainoid score I2198
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 342 1.000 Inparanoid score I2314
OMA 1 1.010 - - QHG52181
OrthoDB 1 1.010 - - D173099at33208
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm24368
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.970

Return to query results.
Submit another query.