DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12398 and HTH

DIOPT Version :9

Sequence 1:NP_572985.1 Gene:CG12398 / 32422 FlyBaseID:FBgn0030596 Length:633 Species:Drosophila melanogaster
Sequence 2:NP_565050.1 Gene:HTH / 843628 AraportID:AT1G72970 Length:594 Species:Arabidopsis thaliana


Alignment Length:652 Identity:171/652 - (26%)
Similarity:255/652 - (39%) Gaps:212/652 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 SYDFIVIGGGSAGCVLAARLSENPEWSVLLLEAGGDEPLLIDLPQLYPVFQRSPWDWKYLTEPSD 120
            |||:||||||:|||.|||.||:|  :|||:||.||     :........|.|:            
plant    62 SYDYIVIGGGTAGCPLAATLSQN--FSVLVLERGG-----VPFTNANVSFLRN------------ 107

  Fly   121 RYCLAMED-------------QRCFWPRAKVLGGCSSINAMMYIRGNRRDYDQWAALGNPGWNYD 172
             :.:.:.|             ...:..||:||||.|.|||..|.|.:.      |.:...||:  
plant   108 -FHIGLADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADA------AFVKRAGWD-- 163

  Fly   173 NILHYFRKLEDMRVPGFEHSPYHGHGGPISVERYRFPSPLLDIFMRAAQ----QLGMVHPDGDFN 233
                  .||.....|..|....|              .|.|.::.:|.:    ::| |.|   ||
plant   164 ------PKLVKESYPWVEREIVH--------------QPKLTLWQKALRDSLLEVG-VRP---FN 204

  Fly   234 GRSQTGFAPPH-------GSLRD--GLRCSANKGYIRRSWQRPNLDIVLKAFVERIVIDPQS--H 287
                 ||...|       |::.|  |.|.:|.:.....:.|:  |.:::.|.|::||.|...  .
plant   205 -----GFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQK--LRVLIYATVQKIVFDTSGTRP 262

  Fly   288 RAIGVIFE-------YGLLKHTVRAKREVILSAGSLASPQLLMVSGVGPRDQLEPQGIPVVQHLP 345
            |..||||:       ..||.:  |...|||||:|::.|||:||:||:||:.:|:...||||....
plant   263 RVTGVIFKDEKGNQHQALLSN--RKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENE 325

  Fly   346 GVGGNLQDH-----------------ISTSG----AIYTFDS---GQNRHLSFIVPEMMNEQAVE 386
            .||..:.|:                 |.|.|    .:|...|   ||:       ||.::..  .
plant   326 HVGKGMADNPMNTILVPSKAPIEQSLIQTVGITKMGVYVEASTGFGQS-------PESIHTH--Y 381

  Fly   387 DFVQGSDSFFYAMPVSEVMGFFSTRYQDPRLDWPDVQIFMGSYGYGADGGMIGRRGAA----ITL 447
            ..:...:..|..:|..:                                    ||..|    ||.
plant   382 GIMSNKNELFSTIPAKQ------------------------------------RRPEATQAYITR 410

  Fly   448 DNYA--EAFEPVLYQDSFVIAPLLMRPRSRGYLQLRSADPKVHPLIHANYYDDPHDMAVMVEGLK 510
            :.|.  |||     ..||::..|.. |.|||:|.|.:.:...:|.:..||:..|.|:...||.::
plant   411 NKYQLHEAF-----NGSFILEKLAY-PISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIR 469

  Fly   511 LAHRL---------TQTP-------VMQSLNATMNIYEWRNCPEVEYLSDAFWECLARFYSQ--- 556
            |..::         ||..       :..|:.|.:|:       ..:.|:|.  :.:|:|...   
plant   470 LVSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINL-------RPKQLNDT--KSMAQFCKDTVV 525

  Fly   557 TIYHPVGTCKMAPASDPAGVVDPRLRVRGMRGLRVIDASIMPTIPTGNTNAPTLMLAE-RGADII 620
            ||:|..|.|.:..      ||.|..:|.|:..|||||.|.....|..|..|..:|:.. .|..|:
plant   526 TIWHYHGGCLVGK------VVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKIL 584

  Fly   621 KE 622
            :|
plant   585 RE 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12398NP_572985.1 PRK02106 55..632 CDD:235000 171/652 (26%)
NADB_Rossmann 58..>93 CDD:304358 23/34 (68%)
NADB_Rossmann 129..354 CDD:304358 73/246 (30%)
GMC_oxred_C 472..615 CDD:282984 43/162 (27%)
HTHNP_565050.1 PLN02785 18..594 CDD:215420 171/652 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 103 1.000 Domainoid score I2249
eggNOG 1 0.900 - - E1_COG2303
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 163 1.000 Inparanoid score I1608
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D798314at2759
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - mtm950
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.860

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