DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12398 and AT3G56060

DIOPT Version :9

Sequence 1:NP_572985.1 Gene:CG12398 / 32422 FlyBaseID:FBgn0030596 Length:633 Species:Drosophila melanogaster
Sequence 2:NP_567032.1 Gene:AT3G56060 / 824772 AraportID:AT3G56060 Length:577 Species:Arabidopsis thaliana


Alignment Length:619 Identity:169/619 - (27%)
Similarity:251/619 - (40%) Gaps:151/619 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 YDFIVIGGGSAGCVLAARLSENPEWSVLLLEAGG---DEPLLIDLPQL-YPVFQRSPWDWKYLTE 117
            :|:|:||||:|||.|||.||:|.  :||:||.||   |:|...|:... ..:...:|..|..   
plant    46 FDYIIIGGGTAGCALAATLSQNA--TVLVLERGGSPYDDPAATDIGNFANTLLNITPNSWSQ--- 105

  Fly   118 PSDRYCLAMEDQRCFWPRAKVLGGCSSINAMMYIRGNRRDYDQWAALGNPGWNYDNILHYFRKLE 182
                  |.:.:...|..||:||||.:.|||..|.|. ..|:     :...||..|.:...:..:|
plant   106 ------LFISEDGVFNSRARVLGGGTVINAGFYSRA-EEDF-----VAEAGWERDEVEAAYEWVE 158

  Fly   183 DMRVPGFEHSPYHGHGGPISVERYRFPSPLLDIFMRAAQQLGMVHPDGDFNGRSQTGFAPPH--- 244
            ...|  ||        .|::..:..|...||:         ..|.|   :|     ||...|   
plant   159 KKVV--FE--------PPVNKWQSAFRDGLLE---------AGVTP---YN-----GFTYEHIVG 196

  Fly   245 ----GSL--RDGLRCSANKGYIRRSWQRPNLDIV-LKAFVERIVI---DPQSHRAIGVIF----- 294
                |::  |||.|.:|..   ...:..||:.:| |.|.|.:|:.   ..|..:|.||||     
plant   197 TKFGGTIFDRDGHRHTAAN---LLEYANPNMIVVYLHASVHKILFTIKGNQRPKAYGVIFLDANG 258

  Fly   295 -----EYGLLKHTVRAKREVILSAGSLASPQLLMVSGVGPRDQLEPQGI-PVVQHLPGVGGNLQD 353
                 |......|:   .|||||||::|||||||:|||||...|....: ||:...|.||..:  
plant   259 VSYKAELATQDSTM---SEVILSAGAIASPQLLMLSGVGPAAHLAAYRVNPVIVDQPMVGQGM-- 318

  Fly   354 HISTSGAIYTFDSGQNRHLSFIVP-----EMMNEQAV-----EDFVQGSDSFFYAMPVSEVMGFF 408
                         |.|......:|     |:...|||     ..:::|..:.  ::.:|....||
plant   319 -------------GDNPMNPVFIPSPEPVEVSLVQAVGITKFGSYIEGGSAL--SLSISLTRSFF 368

  Fly   409 S---TRYQDPRLDWPDVQIFMGSYGYGADGGMIGRRGAAITLDNYAEAFEPVLYQDSFVIAPLLM 470
            .   ...:..:|....:..|..|..              :||:...:|         .||...:.
plant   369 DGVLNLLKKTKLPTQSISKFFKSLD--------------LTLNVTTKA---------GVIIQKVN 410

  Fly   471 RPRSRGYLQLRSADPKVHPLIHANYYDDPHDMAVMVEGLKLAHRLTQT--------PVMQS---L 524
            .|.|||:|:||:.:|..:|.:..||:.||.|:...||||....::..:        |:..:   |
plant   411 GPLSRGHLELRNTNPDDNPSVTFNYFKDPEDLNKCVEGLSTIIKVIDSKGYSKYKYPLASARGLL 475

  Fly   525 NATMNIYEWRNCPEVEYLSDAFWECLARFYSQTIYHPVGTCKMAPASDPAGVVDPRLRVRGMRGL 589
            |..:.:........:....|....|:...  .||||..|.|::..      |||...:|.|:..|
plant   476 NLILALPTNLRPRHITSTFDLEQYCIDTV--MTIYHYHGGCQVGK------VVDNNYKVLGVDAL 532

  Fly   590 RVIDASIMPTIPTGNTNAPTLMLAE-RGADIIKE 622
            |:||.|.....|..|..|..:||.. .|..|::|
plant   533 RIIDGSTFLKSPGTNPQATIMMLGRYMGQKILRE 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12398NP_572985.1 PRK02106 55..632 CDD:235000 169/619 (27%)
NADB_Rossmann 58..>93 CDD:304358 22/37 (59%)
NADB_Rossmann 129..354 CDD:304358 76/248 (31%)
GMC_oxred_C 472..615 CDD:282984 44/154 (29%)
AT3G56060NP_567032.1 PLN02785 5..568 CDD:215420 169/619 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 103 1.000 Domainoid score I2249
eggNOG 1 0.900 - - E1_COG2303
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 163 1.000 Inparanoid score I1608
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D798314at2759
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - mtm950
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.860

Return to query results.
Submit another query.