DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12398 and chdh

DIOPT Version :9

Sequence 1:NP_572985.1 Gene:CG12398 / 32422 FlyBaseID:FBgn0030596 Length:633 Species:Drosophila melanogaster
Sequence 2:XP_002663301.2 Gene:chdh / 100331020 ZFINID:ZDB-GENE-120111-1 Length:585 Species:Danio rerio


Alignment Length:606 Identity:225/606 - (37%)
Similarity:316/606 - (52%) Gaps:87/606 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 HRVRSIHIEDLRESYDFIVIGGGSAGCVLAARLSENPEWSVLLLEAGGDEPLL--------IDLP 99
            ||..|..:.....||.::::|.||||||||:||:|||..||||||||..:..|        |.:|
Zfish    21 HRYISTVVNKNTPSYSYVIVGAGSAGCVLASRLTENPSDSVLLLEAGPKDKHLGSTRLSWKIHMP 85

  Fly   100 Q--LYPVFQRSPWDWKYLTEPSDRYCLAMEDQRCFWPRAKVLGGCSSINAMMYIRGNRRDYDQWA 162
            .  .|.:.. ..::|.|.|.|...    |:|:..:|||.:|.||.||:|||:||||:..||::|.
Zfish    86 AALTYNLCD-DRYNWFYHTLPQAH----MDDRVMYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWQ 145

  Fly   163 ALGNPGWNYDNILHYFRKLEDMRVPGFEHSP--YHGHGGPISVERYRFPSPLLDIFMRAAQQLGM 225
            :.|..|||||:.|.||||.:.     .|..|  |.|..||:.|.|.:..:||...|::|.||.|.
Zfish   146 SEGADGWNYDHCLPYFRKAQT-----HELGPDRYRGGDGPLHVSRGKTQNPLHYAFIQAGQQAGY 205

  Fly   226 VHPDGDFNGRSQTGFAPPHGSLRDGLRCSANKGYIRRSWQRPNLDIVLKAFVERIVIDPQSHRAI 290
            .:.: |.||..|.|......::..|.|.|....|:|.:..||||...::..|.|::.|  ..||.
Zfish   206 PYTE-DMNGFQQEGVGWMDMTIHKGQRWSTASAYLRPALSRPNLSTEVRCMVTRVLFD--GARAR 267

  Fly   291 GVIFEY-GLLKHTVRAKREVILSAGSLASPQLLMVSGVGPRDQLEPQGIPVVQHLPGVGGNLQDH 354
            ||.::. |.:| .|.|::|||||.|::.|||||::||||..|:|:...|||||||||||.|||||
Zfish   268 GVEYQQNGQIK-KVFAEKEVILSGGAINSPQLLLLSGVGNADELKTLDIPVVQHLPGVGCNLQDH 331

  Fly   355 ISTSGAIY---------TFDSGQNRHLSFIVPEMMNEQAVEDFVQGSDSFFYAMPVSEVMGFFST 410
            :.    :|         |....|.       |..|.:..:|..::.:.  :.|....|..||..:
Zfish   332 LE----LYVQHACTQPITLYRAQK-------PLQMLKIGLEWLLKFTG--YGATAHLESGGFIRS 383

  Fly   411 RYQDPRLDWPDVQI-FMGSYGYGADGGMIGRRGAAITLDNYAEAFEPVLYQDSFVIAPLLMRPRS 474
            |   |.:..||:|. |:.|  ...|.|.:..:         .|||:       ..:.|  ||..|
Zfish   384 R---PDVPHPDIQFHFLPS--QVIDHGRVSSK---------IEAFQ-------VHVGP--MRSTS 425

  Fly   475 RGYLQLRSADPKVHPLIHANYYDDPHDMAVMVEGLKLAHRLTQTPVMQSLNATMNIYEWRNCPEV 539
            .|:|:|:|.||:.||::..||.....|:....|.::|.         :.:.|.....|:|. |||
Zfish   426 VGWLKLKSKDPRDHPILQPNYLSTETDVLEFRECVRLT---------REIFAQQAFDEFRG-PEV 480

  Fly   540 E----YLSDAFWECLARFYSQTIYHPVGTCKMAPASDPAGVVDPRLRVRGMRGLRVIDASIMPTI 600
            :    ..|||..:...|..:.:.|||..||||....|...||.|.|||.|:.||||:|||:||::
Zfish   481 QPGPAVQSDAEIDAFVRQKADSAYHPSCTCKMGRPEDRMAVVSPELRVFGVEGLRVVDASVMPSM 545

  Fly   601 PTGNTNAPTLMLAERGADIIK 621
            .:||.||||:|:||:.||.||
Zfish   546 VSGNLNAPTIMIAEKAADAIK 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12398NP_572985.1 PRK02106 55..632 CDD:235000 222/594 (37%)
NADB_Rossmann 58..>93 CDD:304358 22/34 (65%)
NADB_Rossmann 129..354 CDD:304358 100/227 (44%)
GMC_oxred_C 472..615 CDD:282984 56/146 (38%)
chdhXP_002663301.2 PRK02106 30..585 CDD:235000 222/597 (37%)
NADB_Rossmann 38..>69 CDD:304358 22/30 (73%)
GMC_oxred_N 110..333 CDD:279121 103/231 (45%)
GMC_oxred_C 424..561 CDD:282984 57/146 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 241 1.000 Domainoid score I2198
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 342 1.000 Inparanoid score I2314
OMA 1 1.010 - - QHG52181
OrthoDB 1 1.010 - - D173099at33208
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm24368
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.970

Return to query results.
Submit another query.