DRSC/TRiP Functional Genomics Resources

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Protein Alignment fiz and chdh-1

DIOPT Version :9

Sequence 1:NP_001285254.1 Gene:fiz / 32420 FlyBaseID:FBgn0030594 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_495846.1 Gene:chdh-1 / 174390 WormBaseID:WBGene00007917 Length:599 Species:Caenorhabditis elegans


Alignment Length:601 Identity:184/601 - (30%)
Similarity:290/601 - (48%) Gaps:101/601 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 VVIGAGSAGSVVASRLSENPDWRVLVLEAGGDPPVESE------LP-ALFFGLQHTNFTWNYFTE 129
            :::||||||.|:|:||:|:|..|||::|||   ||:.:      :| ||.:.|....:.|:|.| 
 Worm    41 IIVGAGSAGCVLANRLTEDPSNRVLLIEAG---PVDHKWDWRIHMPAALMYNLCSDTYNWHYHT- 101

  Fly   130 PSDEACQAMKDGRCYWPRGKMLGGSGGVNAMLYVRGNRRDFDGWAAMGSTGWSYDQVMPFFEKSV 194
               .|.:.:.:...|||||::.|||..:|||.||||:..|::.|...|::||:|...:|:|:|:.
 Worm   102 ---TAQKNLGNRVFYWPRGRVWGGSSTLNAMCYVRGHAYDYNRWEKEGASGWNYANCLPYFKKAE 163

  Fly   195 TPQGNATHP-------KGYVTLKPFERKDNDIHQMIIDGGRELGQPYVERFQEGSDTGYSHVPGT 252
            | ..:||.|       .|.:.:|..: .:|.:|:..::.|:|....:..........|.|.:..|
 Worm   164 T-YSDATGPNDPYRGNNGPLYVKKGD-AENPLHKAWLNVGKEHPLGWTNDMNGEKQEGISTMDMT 226

  Fly   253 VRQGQRMSTGKGYLGAVSKSRPNLHVVKNALVTKLDLDGETVKEVKFER----AGV-------TH 306
            :..|:|.|..|.|:..: ::||||........|::..|......::|.|    .|.       ..
 Worm   227 IHNGERWSASKAYVHPI-RNRPNLITSSGITCTRVLFDTNKAIGIEFIRKLNFVGTDSIDSYSRE 290

  Fly   307 RVKVTKDVVISAGAIDSPALLLRSGIGPSKHLKELGIPVKLDLPGVGRNLQDHVLVPVFLRLDEG 371
            ::....||:::.|||::|.||:.||:||:.||:...||:..:|||||:|||||:.:.|    .:.
 Worm   291 KIYCQGDVILAGGAINTPQLLMLSGVGPADHLRSHEIPIVANLPGVGQNLQDHLEIYV----QQE 351

  Fly   372 QGEPMTDQAALDSIY----------------QYLIYRAGPLAAHSTASLVGFINTNASSDG--AY 418
            ..:|:|       :|                ::...|.| |.|.|.....||    |.||.  .:
 Worm   352 STQPVT-------LYNKSSWKFPHNMIKIGLEWFTNRTG-LGASSHLETGGF----ARSDDTVTH 404

  Fly   419 PDTENHHMFFQRAHHASLELFTKGLSIQDQYTEVLQEYLKDSHLLCVFVLLSHPAARGELRLKST 483
            ||.:.|  |.....|            .|..|.      ...|...|.|......::|.:.|::.
 Worm   405 PDIQFH--FLPSTVH------------DDGRTN------GTCHGYQVHVGPMRSQSKGYIMLQAK 449

  Fly   484 DPKVPPILTSNYLTESEDVATLMRGIRYIESLEQTKAFQDHLA-EIARIPIKECD-QIENYRSEE 546
            ||:..||:..||:.|..|.....:.||....|..:|||.:... |:|..|..:.| .|:.:..|:
 Worm   450 DPRRAPIINPNYMEEDSDWREFRKCIRVSRELFASKAFDEFRGKELAPGPDCQSDADIDRFVKEK 514

  Fly   547 YWRCYAKYFTVTCYHQSGTVKMGPDYDNEACVS-QRLKVHGLENLRVADASIMPAVVSANTNAAT 610
                     ..:.||.|.|.|||.:.|..|.|: :.:.|:|.|||:|.|||:||::||.|.||..
 Worm   515 ---------AASAYHPSCTCKMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPV 570

  Fly   611 VMIGERAAHFIQEDYQ 626
            :|:.||||..|:...|
 Worm   571 IMMAERAADLIKHKKQ 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fizNP_001285254.1 PRK02106 66..621 CDD:235000 182/594 (31%)
NADB_Rossmann 70..>105 CDD:304358 18/32 (56%)
NADB_Rossmann 142..359 CDD:304358 75/234 (32%)
GMC_oxred_C 472..617 CDD:282984 50/147 (34%)
chdh-1NP_495846.1 PRK02106 41..599 CDD:235000 184/601 (31%)
NADB_Rossmann 41..>78 CDD:304358 20/39 (51%)
NADB_Rossmann 108..345 CDD:304358 77/239 (32%)
GMC_oxred_C 439..577 CDD:282984 50/146 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 94 1.000 Domainoid score I4696
eggNOG 1 0.900 - - E1_COG2303
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52181
OrthoDB 1 1.010 - - D173099at33208
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm14159
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.690

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