DRSC/TRiP Functional Genomics Resources

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Protein Alignment fiz and chdh

DIOPT Version :9

Sequence 1:NP_001285254.1 Gene:fiz / 32420 FlyBaseID:FBgn0030594 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_002663301.2 Gene:chdh / 100331020 ZFINID:ZDB-GENE-120111-1 Length:585 Species:Danio rerio


Alignment Length:613 Identity:205/613 - (33%)
Similarity:297/613 - (48%) Gaps:90/613 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LLSSQCLVSPASQWPVDYVGDLSQPYDFVVIGAGSAGSVVASRLSENPDWRVLVLEAGGDPPVES 108
            |:||.|......::....|...:..|.:|::||||||.|:||||:|||...||:||||   |.:.
Zfish    10 LMSSLCSPLLHHRYISTVVNKNTPSYSYVIVGAGSAGCVLASRLTENPSDSVLLLEAG---PKDK 71

  Fly   109 EL------------PALFFGLQHTNFTWNYFTEPSDEACQAMKDGR-CYWPRGKMLGGSGGVNAM 160
            .|            .||.:.|....:.|.|.|.|     ||..|.| .|||||::.|||..:|||
Zfish    72 HLGSTRLSWKIHMPAALTYNLCDDRYNWFYHTLP-----QAHMDDRVMYWPRGRVWGGSSSLNAM 131

  Fly   161 LYVRGNRRDFDGWAAMGSTGWSYDQVMPFFEKSVTPQGNATHPKG-----YVTLKPFERKDNDIH 220
            :|:||:..|::.|.:.|:.||:||..:|:|.|:.|.:......:|     :|:.   .:..|.:|
Zfish   132 VYIRGHAEDYNRWQSEGADGWNYDHCLPYFRKAQTHELGPDRYRGGDGPLHVSR---GKTQNPLH 193

  Fly   221 QMIIDGGRELGQPYVERFQEGSDTGYSHVPGTVRQGQRMSTGKGYLGAVSKSRPNLHVVKNALVT 285
            ...|..|::.|.||.|........|...:..|:.:|||.||...|| ..:.|||||......:||
Zfish   194 YAFIQAGQQAGYPYTEDMNGFQQEGVGWMDMTIHKGQRWSTASAYL-RPALSRPNLSTEVRCMVT 257

  Fly   286 KLDLDGETVKEVKFERAGVTHRVKVTKDVVISAGAIDSPALLLRSGIGPSKHLKELGIPVKLDLP 350
            ::..||...:.|::::.|...:|...|:|::|.|||:||.|||.||:|.:..||.|.|||...||
Zfish   258 RVLFDGARARGVEYQQNGQIKKVFAEKEVILSGGAINSPQLLLLSGVGNADELKTLDIPVVQHLP 322

  Fly   351 GVGRNLQDHVLVPVFLRLDEGQGEPMTDQAA----------LDSIYQYLIYRAGPLAAHSTASLV 405
            |||.|||||    :.|.:.....:|:|...|          |:.:.::..|.|   .||..:.  
Zfish   323 GVGCNLQDH----LELYVQHACTQPITLYRAQKPLQMLKIGLEWLLKFTGYGA---TAHLESG-- 378

  Fly   406 GFINTNASSDGAYPDTENHHMFFQRAHH----ASLELFTKGLSIQDQYTEVLQEYLKDSHLLCVF 466
            |||.:.  .|..:||.:.|.:..|...|    :.:|.|.                        |.
Zfish   379 GFIRSR--PDVPHPDIQFHFLPSQVIDHGRVSSKIEAFQ------------------------VH 417

  Fly   467 VLLSHPAARGELRLKSTDPKVPPILTSNYLTESEDVATLMRGIRYIESLEQTKAFQDHLA-EIAR 530
            |......:.|.|:|||.||:..|||..|||:...||......:|....:...:||.:... |:..
Zfish   418 VGPMRSTSVGWLKLKSKDPRDHPILQPNYLSTETDVLEFRECVRLTREIFAQQAFDEFRGPEVQP 482

  Fly   531 IPIKECD-QIENYRSEEYWRCYAKYFTVTCYHQSGTVKMGPDYDNEACVSQRLKVHGLENLRVAD 594
            .|..:.| :|:         .:.:....:.||.|.|.|||...|..|.||..|:|.|:|.|||.|
Zfish   483 GPAVQSDAEID---------AFVRQKADSAYHPSCTCKMGRPEDRMAVVSPELRVFGVEGLRVVD 538

  Fly   595 ASIMPAVVSANTNAATVMIGERAAHFIQ 622
            ||:||::||.|.||.|:||.|:||..|:
Zfish   539 ASVMPSMVSGNLNAPTIMIAEKAADAIK 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fizNP_001285254.1 PRK02106 66..621 CDD:235000 199/588 (34%)
NADB_Rossmann 70..>105 CDD:304358 21/34 (62%)
NADB_Rossmann 142..359 CDD:304358 85/222 (38%)
GMC_oxred_C 472..617 CDD:282984 54/146 (37%)
chdhXP_002663301.2 PRK02106 30..585 CDD:235000 200/593 (34%)
NADB_Rossmann 38..>69 CDD:304358 21/33 (64%)
GMC_oxred_N 110..333 CDD:279121 88/230 (38%)
GMC_oxred_C 424..561 CDD:282984 54/145 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 107 1.000 Domainoid score I6434
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52181
OrthoDB 1 1.010 - - D173099at33208
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm24368
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.830

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