DRSC/TRiP Functional Genomics Resources

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Protein Alignment toporsa and Topors

DIOPT Version :9

Sequence 1:NP_001292484.1 Gene:toporsa / 324197 ZFINID:ZDB-GENE-030131-6401 Length:999 Species:Danio rerio
Sequence 2:NP_001261083.1 Gene:Topors / 37188 FlyBaseID:FBgn0267351 Length:1038 Species:Drosophila melanogaster


Alignment Length:1064 Identity:244/1064 - (22%)
Similarity:408/1064 - (38%) Gaps:274/1064 - (25%)


- Green bases have known domain annotations that are detailed below.


Zfish    23 SPESKCPICLDHFKNISYLDVCLHKFCFCCIHEWSKNKAECPLCKQPFNSFYHTIKSEDDYKRFD 87
            ||...|.|||...:...:.|.|:|:|||.|:.||||.|.|||||||||.:..|.:::.|||.|:.
  Fly    97 SPPPNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPFRTIIHNVRTLDDYDRYP 161

Zfish    88 LR-----PTENGSFGNMAGQRFRY------RTTLTGD-----------------------RRPVQ 118
            ::     ||||.|......:|.||      :..:..|                       ||...
  Fly   162 VQTTSPVPTENPSLRYHIVRRPRYTPLVQNQAVIVNDIEAAIAAGAAGEDVLSAAEVAAGRRSYS 226

Zfish   119 RRTSPPPDHGIIFEGLRGSLPQ--RHNRDLHSMIRRLTVRQRRESEGRSLRSLQDQEVVKFRRAL 181
            |           ||..|..|..  :|::|              .|...||..|       :||.:
  Fly   227 R-----------FEPYRSELMNYYQHDQD--------------ASTSGSLSQL-------WRRYV 259

Zfish   182 YRRGVQVQSVQDG--GRTRETSAEFFKRNPACLHRLVPWLRRELTVLYGAHGSLVNIVQHIIMTL 244
            |.|.:....|.|.  |..||.||.|::.|||.:|||:||:.|::..|.......||.|..::..|
  Fly   260 YDRKLYALPVSDSVTGHFREWSARFYRNNPAQIHRLMPWIHRDIMCLLRNAAHSVNTVMTLMSDL 324

Zfish   245 ITRHNLDDQAVQHELRPFLLSHTEHFLHEFLSFARSPFNMEAYDQRAVYD-----------LPRP 298
            :...:|.....:..|.|:|...|.||:||..:|||||:::..||....|.           |...
  Fly   325 LPMTSLLGPTFRRRLSPYLGERTSHFIHELFNFARSPYDINGYDHVVQYSARVAEEVEVDLLDMV 389

Zfish   299 SGESSSSENSVIAISEDESESLVSG-AQDFATPRVTSSQTAWDDETPGPSYS------SERSQVL 356
            ..:||:.::..:.:.:.:::::.:| :.|::.|||..| |:.....||.::|      |:.|::.
  Fly   390 ETQSSNGDDLNLEVGDSDADAINAGFSPDWSPPRVRPS-TSVIVTNPGATHSFSVTMASDGSELP 453

Zfish   357 PVHVRDSDSDSSVGEAVMPI-------AAVRHQ----------DHPAN----------------- 387
            .:.:|.:   ::||...:.|       |||..:          |..||                 
  Fly   454 GISIRRT---TNVGSQTVAINLSMRRPAAVASEEPEVIEIDDGDAAANAEVAAINDGSNTSRRHA 515

Zfish   388 ----PSTIQPE-EDHSSSNDED-CVIIGYVKPVAERTPELVQLSSDSENS----ETEQNASP--- 439
                |.|...| |..|||.||| ||.:..:||...||||.|.|.|:|::.    ..:..|:|   
  Fly   516 GATLPVTAHIELESSSSSGDEDECVFVLELKPPHMRTPEQVSLDSNSDSDVVFVNEQHEAAPDAI 580

Zfish   440 ---RNSQAPQHIR------FISDSDASPTASQ-----------------RPLRGPASSSRSFEDT 478
               |::|:|..:.      |:..|.:...|::                 |.||    |.||.:. 
  Fly   581 AENRSTQSPLDLASRDQGLFMGPSTSGAAANRGKNWKLVMAQTRRLDQLRTLR----SIRSKKS- 640

Zfish   479 SIQLRKNSKYDNTFSGSREGSSQSKRIHSSSHRKKQPLCKESKNKQRGEKETSRHSSSYWHSYSY 543
                |::|....:.|||...|..|...|.||...:......:.|.:..:|:              
  Fly   641 ----RRSSMPARSDSGSSPSSCSSSSFHFSSSSDEDSSDSSTTNSEPPKKK-------------- 687

Zfish   544 YSHDNSRKAYTETSSSYTSYYRSVNDQFGSRSHGKRRCRDLLDRSRSRSNSRISQSNRRNRSRSR 608
                 |||......       ||..:..|.|:..||:.:|  .........:|||...:.:..|.
  Fly   688 -----SRKRVANNK-------RSKKESIGKRTSRKRKAKD--QNMEMLEQQQISQKKPQRQPESS 738

Zfish   609 SNSRISRSNQRNRSHSRSNSGKSQSNRRNRSCSRSYSRTSPFNERNRRHSRSNSR-KSQSNRHNR 672
            |:|. |.|:..:...|..:||:..:| .|:|.|.|...::.    |.:.|...:. |:::...:|
  Fly   739 SDSP-SSSDDESGGDSSESSGQPNTN-NNKSSSDSDDDSAV----NMQLSALRATLKAEATLEDR 797

Zfish   673 SCSRSYSRTSPFNERNRRHSRSNSRKSQSNRHNRSCSRSYSRTSPFNQRNRRHSRSNSRISQSSR 737
            ...:...:....::....|||......:.|  ...||                         :.:
  Fly   798 KPVKLELQLPDDDQAGPLHSRMTPSPREDN--EPGCS-------------------------APK 835

Zfish   738 QNRSLSRSNSRKGYSNRRNRNHSRSSSRVSQSSQRNRSHSRSNFRIKSSSY------KSQDEKYQ 796
            :.||.|.||           ..|:|:|..|.|:..:.|...|:|...::.:      :......:
  Fly   836 RRRSCSHSN-----------QSSQSASLASSSTATSSSAPLSSFAWGAAGFSGDPLMRGHPAMEE 889

Zfish   797 RSLSRSLYSNNDVRSRSRSSSRINTSSRQDRRRSRSSSR-MNSSS---SRQTSCHDKYGKKRMYK 857
            ..::.||.      ..|..:..:|.....:...|..:|. |.|::   |.||...|....:..:.
  Fly   890 HDIANSLI------ELSTLTQPVNIGLFNEHYNSAENSMGMLSNTLCDSPQTLAADDANLENYFD 948

Zfish   858 TKHHEKPSRQSSSKSVGDSDEVGGKKK-----------KKKHTKRRKTRSPSIDDRSEGHSQRHH 911
            |....:.||:..:.|:..:.:|.|:.:           :::..:..:......||:.|..:....
  Fly   949 TDADPEASRERDAYSLEAAIDVVGESELQIAEDTATATEEQDEEDEEDEDQEEDDQEEEKAAEEE 1013

Zfish   912 KRKKKHKKKSKRHNSKERTRKLSP 935
            :.:::....|..|:..:..:.|.|
  Fly  1014 EEEEEDDDDSDNHDENDENQGLLP 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toporsaNP_001292484.1 RING-HC_Topors 28..67 CDD:319488 20/38 (53%)
RING-HC finger (C3HC4-type) 28..66 CDD:319488 19/37 (51%)
RRM 635..>749 CDD:330708 19/114 (17%)
ToporsNP_001261083.1 RING 102..144 CDD:238093 23/41 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579333
Domainoid 1 1.000 138 1.000 Domainoid score I4802
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 193 1.000 Inparanoid score I3836
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003652
OrthoInspector 1 1.000 - - otm24963
orthoMCL 1 0.900 - - OOG6_104232
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9253
SonicParanoid 1 1.000 - - X4653
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.820

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