DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9512 and chdh

DIOPT Version :9

Sequence 1:NP_001285253.1 Gene:CG9512 / 32419 FlyBaseID:FBgn0030593 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_002663301.2 Gene:chdh / 100331020 ZFINID:ZDB-GENE-120111-1 Length:585 Species:Danio rerio


Alignment Length:626 Identity:215/626 - (34%)
Similarity:305/626 - (48%) Gaps:101/626 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LMSLLLSTLI-TKYCDLSGQNQWPEDKGDWLEQAGGFKHDYDFIVIGSGTSGAVVAGRLAEVKNW 82
            |||.|.|.|: .:|.........|               .|.::::|:|::|.|:|.||.|..:.
Zfish    10 LMSSLCSPLLHHRYISTVVNKNTP---------------SYSYVIVGAGSAGCVLASRLTENPSD 59

  Fly    83 KVLLLEAG-GDPPIETEFVAW--HMATQFS------EWDWQYHSKPNGRACMAMKGESCHWPRGK 138
            .||||||| .|..:.:..::|  ||....:      .::|.||:.|...    |.....:||||:
Zfish    60 SVLLLEAGPKDKHLGSTRLSWKIHMPAALTYNLCDDRYNWFYHTLPQAH----MDDRVMYWPRGR 120

  Fly   139 MLGGTNGMNAMIYARGTRKDFDDWEERGNPGWGYDEVLKHFRKAEDLRSTRPD-YKPGDHGVGGP 202
            :.||::.:|||:|.||..:|::.|:..|..||.||..|.:||||: .....|| |:.||    ||
Zfish   121 VWGGSSSLNAMVYIRGHAEDYNRWQSEGADGWNYDHCLPYFRKAQ-THELGPDRYRGGD----GP 180

  Fly   203 MGLNNYVSDNEFR-TTIRAGMQEMGYGSAPDFT----EGSFVGQMDILGTQDGGRRITTARSHLK 262
            :.::...:.|... ..|:|| |:.||....|..    ||  ||.||:  |...|:|.:||.::|:
Zfish   181 LHVSRGKTQNPLHYAFIQAG-QQAGYPYTEDMNGFQQEG--VGWMDM--TIHKGQRWSTASAYLR 240

  Fly   263 K--NTPNLHILRHAHVKKINLDRNNRAESVTFVHRG--KKEYTVKASKEVIVSAGAIGSPQILLL 323
            .  :.|||.......|.::..| ..||..|.:...|  ||   |.|.||||:|.|||.|||:|||
Zfish   241 PALSRPNLSTEVRCMVTRVLFD-GARARGVEYQQNGQIKK---VFAEKEVILSGGAINSPQLLLL 301

  Fly   324 SGIGPADHLKSLGIPVKLDLP-VGENLKDHASL--------PMIFQIDKSTARKPTEEELVDAMY 379
            ||:|.||.||:|.|||...|| ||.||:||..|        |    |....|:||.:...:...:
Zfish   302 SGVGNADELKTLDIPVVQHLPGVGCNLQDHLELYVQHACTQP----ITLYRAQKPLQMLKIGLEW 362

  Fly   380 NLLMGRYSKLLHHEATALTGFINTTSIEGPNPDIQTTNFFSLMQSPELKGYVAATGFNDRVAKSI 444
            .|....|....|.|:   .|||.:.. :.|:||||    |..:.|..:.        :.||:..|
Zfish   363 LLKFTGYGATAHLES---GGFIRSRP-DVPHPDIQ----FHFLPSQVID--------HGRVSSKI 411

  Fly   445 LSANQETNTYITYLLHLKPF---SAGSLTLQSANYLDAPIIDPGYMTDERDVDTYIRALNIYKNL 506
            .:          :.:|:.|.   |.|.|.|:|.:..|.||:.|.|::.|.||..:...:.:.:.:
Zfish   412 EA----------FQVHVGPMRSTSVGWLKLKSKDPRDHPILQPNYLSTETDVLEFRECVRLTREI 466

  Fly   507 PNTKAFSEREAALHKLDLEACNGLTYQSDDYWRCYIRHMTTTVYHPVGTTRMGPSTDPTAVVDPQ 571
            ...:||.|....      |...|...|||.....::|....:.|||..|.:||...|..|||.|:
Zfish   467 FAQQAFDEFRGP------EVQPGPAVQSDAEIDAFVRQKADSAYHPSCTCKMGRPEDRMAVVSPE 525

  Fly   572 LRVHGAKGLRVIDASIMPDIVGANTNAACIMIAEKGADMIK 612
            |||.|.:||||:|||:||.:|..|.||..||||||.||.||
Zfish   526 LRVFGVEGLRVVDASVMPSMVSGNLNAPTIMIAEKAADAIK 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9512NP_001285253.1 PRK02106 56..612 CDD:235000 205/586 (35%)
NADB_Rossmann 120..352 CDD:304358 96/242 (40%)
GMC_oxred_C 463..606 CDD:282984 55/145 (38%)
chdhXP_002663301.2 PRK02106 30..585 CDD:235000 208/606 (34%)
NADB_Rossmann 38..>69 CDD:304358 15/30 (50%)
GMC_oxred_N 110..333 CDD:279121 97/236 (41%)
GMC_oxred_C 424..561 CDD:282984 55/142 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 107 1.000 Domainoid score I6434
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52181
OrthoDB 1 1.010 - - D173099at33208
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm24368
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.830

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