DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9514 and Chdh

DIOPT Version :9

Sequence 1:NP_572981.1 Gene:CG9514 / 32418 FlyBaseID:FBgn0030592 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001129712.1 Gene:Chdh / 218865 MGIID:1860776 Length:596 Species:Mus musculus


Alignment Length:574 Identity:223/574 - (38%)
Similarity:314/574 - (54%) Gaps:56/574 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 YDFIIIGGGSAGTVLASRLSEIPHWKILLLEAGGHETEISDVPL---------LSLYLHKSKMDW 150
            |.|:::|.||||.||||||:|.|:.::||||||..:..:....|         |...|...|.:|
Mouse    43 YTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLCDDKYNW 107

  Fly   151 KYRTQPQPTACQAMKDKRCCWTRGKVLGGSSVLNTMLYIRGNKRDFDQWADFGNPGWSYEDILPY 215
            .|.|:|||    .|..:...|.||:|.||||.||.|:||||:..|:::|...|..||.|...|||
Mouse   108 YYHTEPQP----GMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDYAHCLPY 168

  Fly   216 FRKSEDQRNPYLARNKRYHGTGGLWTVQDAPYNTPIGPAFLQAGEEMGYDIV-DVNGEQQTGFGF 279
            |||:  ||:. |..| .|.|..|...|.....|.|:..|||||..:.||... |:||.||.|||:
Mouse   169 FRKA--QRHE-LGAN-MYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGW 229

  Fly   280 YQFNMRRGSRSSTAKSFLRPARLRPNLHVALFSHVTKVLTDPHTKRATGVQFIRDGRLQNVYATR 344
            ....:.:|.|.|||.::|.|...||||...:.:.|::||.:  ..||.||::|:||:....|.:|
Mouse   230 MDMTVHQGKRWSTACAYLHPVLSRPNLRAEVQTLVSRVLFE--GTRAVGVEYIKDGQRHKAYVSR 292

  Fly   345 EVILSAGAIGSPHLMMLSGIGHGEELGRVGIPLVQHLPGVGQNLQDHIAVGGIAFLIDYPISI-- 407
            |||||.|||.||.|:||||:|:.::|.::.||:|.||||||||||||:.| .:......||::  
Mouse   293 EVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEV-YVQQACTQPITLHS 356

  Fly   408 VMK--RMVNINTALRYAITEDGPLTSSIGLEAVAFINTKYANASDDWPDMNFMMTSASVMSDGGS 470
            ..|  |.|.|.....::.|.||   ::..||...||.::   .....||:.|....:.|:..|..
Mouse   357 AQKPLRKVCIGLEWLWSYTGDG---ATAHLETGGFIRSR---PGVPHPDIQFHFLPSQVIDHGRK 415

  Fly   471 QVKTAHGLTDEFYQEVFGEVNNRDVFGVFPMMLRPKSRGYIKLASKNPLRYPLLYHNYLTHPDDV 535
            ..:      .|.||...|             .:|..|.|::||.|.||..:|:::.|||:...||
Mouse   416 PTQ------QEAYQVHVG-------------TMRATSVGWLKLRSANPRDHPVIHPNYLSTETDV 461

  Fly   536 NVLREGVKAAVAMGETQAMKRFGARYWNKPVPNCKHLTLYTDDYWNCFIRQYTMTIYHMSGTAKM 600
            ...|:.|:.:..:...:|:    |.:..|.:....|  :.:|...:.|:|....:.||.|.|.||
Mouse   462 EDFRQCVRLSREIFAQEAL----APFRGKELQPGSH--VQSDKEIDAFVRAKADSAYHPSCTCKM 520

  Fly   601 GPPTDPWAVVDPQLRVYGIPGLRVIDASIMPAITNGNIHAPVVMIGEKGADMIK 654
            |..:||.||||.|.:|.|:..|||:||||||::.:||::||.|||.||.||:||
Mouse   521 GRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMIAEKAADIIK 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9514NP_572981.1 PRK02106 95..679 CDD:235000 223/574 (39%)
NADB_Rossmann 96..>126 CDD:304358 17/29 (59%)
NADB_Rossmann 167..391 CDD:304358 105/224 (47%)
GMC_oxred_C 505..648 CDD:282984 54/142 (38%)
ChdhNP_001129712.1 PRK02106 42..588 CDD:235000 223/574 (39%)
NAD_binding_8 47..>76 CDD:290186 18/28 (64%)
GMC_oxred_N 118..341 CDD:279121 107/228 (47%)
GMC_oxred_C 432..569 CDD:282984 55/142 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 241 1.000 Domainoid score I2232
eggNOG 1 0.900 - - E1_COG2303
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 336 1.000 Inparanoid score I2378
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52181
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm42468
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3702
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.800

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