DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9518 and Chdh

DIOPT Version :9

Sequence 1:NP_001285249.1 Gene:CG9518 / 32416 FlyBaseID:FBgn0030590 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_001129712.1 Gene:Chdh / 218865 MGIID:1860776 Length:596 Species:Mus musculus


Alignment Length:591 Identity:227/591 - (38%)
Similarity:315/591 - (53%) Gaps:66/591 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDEN---------EISDVPSLAAYLQLSKLD 111
            ||.|:|||:||||.|:|:||:|....:|||:||||.:.         :|....:|.:.|...|.:
Mouse    42 EYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLCDDKYN 106

  Fly   112 WAYKTEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVLR 176
            |.|.|||..    ||.:....||||||.||||.||.|:|:||:..||:.|...|..||||.:.|.
Mouse   107 WYYHTEPQP----GMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDYAHCLP 167

  Fly   177 YFKKSEDNRNPYLANNKYHGRGGLLTVQESPWHSPLVAAFVEAGTQLGYD-NRDINGAKQAGFMI 240
            ||:|::.:.   |..|.|.|..|.|.|.....:.||..||::|..|.||. ..|:||.:|.||..
Mouse   168 YFRKAQRHE---LGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGW 229

  Fly   241 AQGTIRRGSRCSTAKAFLRPIRMRKNFHLSMNSHVTRVIIEPGTMRAQAVEFVKHGKVYRIAARR 305
            ...|:.:|.|.|||.|:|.|:..|.|....:.:.|:||:.| || ||..||::|.|:.::....|
Mouse   230 MDMTVHQGKRWSTACAYLHPVLSRPNLRAEVQTLVSRVLFE-GT-RAVGVEYIKDGQRHKAYVSR 292

  Fly   306 EVIISAGAINTPQLMMLSGLGPRKHLEKHGIRVLQDLP-VGENMQDHVGMGGLTFLVD----KPV 365
            |||:|.||||:|||:||||:|....|.|..|.|:..|| ||:|:|||     |...|.    :|:
Mouse   293 EVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDH-----LEVYVQQACTQPI 352

  Fly   366 AI--VQDRFNPTAVTFQYVLRERGPMTTLGGVEGLAFVHTPYSNRSLDWPDIQFHMAPASINSDN 428
            .:  .|.......:..:::....|...| ..:|...|:.   |...:..||||||..|:.: .|:
Mouse   353 TLHSAQKPLRKVCIGLEWLWSYTGDGAT-AHLETGGFIR---SRPGVPHPDIQFHFLPSQV-IDH 412

  Fly   429 GARVKKVLGLKESVYQEVYHPIANKDSWTIMPLLLRPRSRGSVKLRSANPFHYPLINANYFDDPL 493
            |         ::...||.|.         :....:|..|.|.:|||||||..:|:|:.||    |
Mouse   413 G---------RKPTQQEAYQ---------VHVGTMRATSVGWLKLRSANPRDHPVIHPNY----L 455

  Fly   494 DAKTLVEGAKIALRVAEAQVFKQFGSRLWRKPLPNCKQHKFLSDAYLECHVRTISMTIYHPCGTA 558
            ..:|.||..:..:|::. ::|.|.....:|........| ..||..::..||..:.:.|||..|.
Mouse   456 STETDVEDFRQCVRLSR-EIFAQEALAPFRGKELQPGSH-VQSDKEIDAFVRAKADSAYHPSCTC 518

  Fly   559 KMGPAWDPEAVVDPRLRVYGVRGLRVIDASIMPTISSGNTNAPVIMIAEKGADLIK-----EDWL 618
            |||.:.||.||||.:.:|.||..|||:||||||::.|||.|||.:|||||.||:||     || .
Mouse   519 KMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMIAEKAADIIKGHPALED-K 582

  Fly   619 TNPEYK 624
            ..|.||
Mouse   583 NVPVYK 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9518NP_001285249.1 PRK02106 56..614 CDD:235000 220/574 (38%)
NADB_Rossmann 128..351 CDD:304358 99/224 (44%)
GMC_oxred_C 465..608 CDD:282984 60/142 (42%)
ChdhNP_001129712.1 PRK02106 42..588 CDD:235000 225/589 (38%)
NAD_binding_8 47..>76 CDD:290186 17/28 (61%)
GMC_oxred_N 118..341 CDD:279121 101/232 (44%)
GMC_oxred_C 432..569 CDD:282984 61/142 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 241 1.000 Domainoid score I2232
eggNOG 1 0.900 - - E1_COG2303
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 336 1.000 Inparanoid score I2378
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52181
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm42468
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.860

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