DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9518 and chdh

DIOPT Version :9

Sequence 1:NP_001285249.1 Gene:CG9518 / 32416 FlyBaseID:FBgn0030590 Length:703 Species:Drosophila melanogaster
Sequence 2:XP_002663301.2 Gene:chdh / 100331020 ZFINID:ZDB-GENE-120111-1 Length:585 Species:Danio rerio


Alignment Length:574 Identity:212/574 - (36%)
Similarity:308/574 - (53%) Gaps:54/574 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 PEYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISD--------VPSLAAY-LQLSKL 110
            |.|.:::||:||||.|:|:||:|.....|||:||||.:..:..        :|:...| |...:.
Zfish    33 PSYSYVIVGAGSAGCVLASRLTENPSDSVLLLEAGPKDKHLGSTRLSWKIHMPAALTYNLCDDRY 97

  Fly   111 DWAYKTEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVL 175
            :|.|.|.|...    |.:....||||||.||||.||.|:|:||:..||:.|.|.|..||:||:.|
Zfish    98 NWFYHTLPQAH----MDDRVMYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWQSEGADGWNYDHCL 158

  Fly   176 RYFKKSEDNRNPYLANNKYHGRGGLLTVQESPWHSPLVAAFVEAGTQLGYD-NRDINGAKQAGFM 239
            .||:|::.:.   |..::|.|..|.|.|......:||..||::||.|.||. ..|:||.:|.|..
Zfish   159 PYFRKAQTHE---LGPDRYRGGDGPLHVSRGKTQNPLHYAFIQAGQQAGYPYTEDMNGFQQEGVG 220

  Fly   240 IAQGTIRRGSRCSTAKAFLRPIRMRKNFHLSMNSHVTRVIIEPGTMRAQAVEFVKHGKVYRIAAR 304
            ....||.:|.|.|||.|:|||...|.|....:...||||:.:..  ||:.||:.::|::.::.|.
Zfish   221 WMDMTIHKGQRWSTASAYLRPALSRPNLSTEVRCMVTRVLFDGA--RARGVEYQQNGQIKKVFAE 283

  Fly   305 REVIISAGAINTPQLMMLSGLGPRKHLEKHGIRVLQDLP-VGENMQDHVGMGGLTFLVDKPVAI- 367
            :|||:|.||||:|||::|||:|....|:...|.|:|.|| ||.|:|||:.: .:.....:|:.: 
Zfish   284 KEVILSGGAINSPQLLLLSGVGNADELKTLDIPVVQHLPGVGCNLQDHLEL-YVQHACTQPITLY 347

  Fly   368 -VQDRFNPTAVTFQYVLRERGPMTTLGGVEGLAFVHTPYSNRSLDWPDIQFHMAPASINSDNGAR 431
             .|.......:..:::|:..|...| ..:|...|:.   |...:..||||||..|:.: .|:|..
Zfish   348 RAQKPLQMLKIGLEWLLKFTGYGAT-AHLESGGFIR---SRPDVPHPDIQFHFLPSQV-IDHGRV 407

  Fly   432 VKKVLGLKESVYQEVYHPIANKDSWTIMPLLLRPRSRGSVKLRSANPFHYPLINANYFDDPLDAK 496
            ..|:     ..:|....|             :|..|.|.:||:|.:|..:|::..||.....|..
Zfish   408 SSKI-----EAFQVHVGP-------------MRSTSVGWLKLKSKDPRDHPILQPNYLSTETDVL 454

  Fly   497 TLVEGAKIALRVAEAQVFKQF-GSRLWRKPLPNCKQHKFLSDAYLECHVRTISMTIYHPCGTAKM 560
            ...|..::...:...|.|.:| |..:  :|.|..:     |||.::..||..:.:.|||..|.||
Zfish   455 EFRECVRLTREIFAQQAFDEFRGPEV--QPGPAVQ-----SDAEIDAFVRQKADSAYHPSCTCKM 512

  Fly   561 GPAWDPEAVVDPRLRVYGVRGLRVIDASIMPTISSGNTNAPVIMIAEKGADLIK 614
            |...|..|||.|.|||:||.||||:|||:||::.|||.|||.||||||.||.||
Zfish   513 GRPEDRMAVVSPELRVFGVEGLRVVDASVMPSMVSGNLNAPTIMIAEKAADAIK 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9518NP_001285249.1 PRK02106 56..614 CDD:235000 209/571 (37%)
NADB_Rossmann 128..351 CDD:304358 97/224 (43%)
GMC_oxred_C 465..608 CDD:282984 58/143 (41%)
chdhXP_002663301.2 PRK02106 30..585 CDD:235000 212/574 (37%)
NADB_Rossmann 38..>69 CDD:304358 17/30 (57%)
GMC_oxred_N 110..333 CDD:279121 99/227 (44%)
GMC_oxred_C 424..561 CDD:282984 59/143 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 241 1.000 Domainoid score I2198
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 342 1.000 Inparanoid score I2314
OMA 1 1.010 - - QHG52181
OrthoDB 1 1.010 - - D173099at33208
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm24368
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.970

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