DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9519 and Chdh

DIOPT Version :9

Sequence 1:NP_572978.1 Gene:CG9519 / 32415 FlyBaseID:FBgn0030589 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_942026.1 Gene:Chdh / 290551 RGDID:735166 Length:599 Species:Rattus norvegicus


Alignment Length:609 Identity:216/609 - (35%)
Similarity:292/609 - (47%) Gaps:129/609 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 KYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYAM---------DIP--IVAHLLQLGE 114
            :|.|||||||:|||.||.||:|:|..||||||| ||::..|         .:|  :||:|.. .:
  Rat    45 EYTFIVVGAGSAGCVLANRLTEDPNHRVLLLEA-GPKDLLMGSKRLQWKIHMPAALVANLCD-DK 107

  Fly   115 INWKYKTEPSNSYCLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWARLGNPGWSYEEV 179
            .||.|.||...    .::.....||||:|.||||.||.|:|.||:..||:||.|.|..||.|...
  Rat   108 YNWYYHTEAQP----GLDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDYAHC 168

  Fly   180 LPYFKKYEGSVVPDADENLVGRN------GPVKVSYSETRTRIADAFVGATQDAGLP-RGDYNGD 237
            ||||:|        |.::.:|.|      ||:.||..:|...:..||:.|.:.||.| ..|.||.
  Rat   169 LPYFRK--------AQKHELGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGF 225

  Fly   238 KQIRVSYLQANIYNETRWSSNRAYLYPIKGKRRNLHVKKNALVTKILIDPQTKSAFGIIVKMDGK 302
            :|....::...|:...|||:..|||.|.. .|.||..:...||:::|.  :...|.|:....||:
  Rat   226 QQEGFGWMDMTIHQGKRWSTASAYLRPAL-SRPNLRAEVQTLVSRVLF--EGTRAVGVEYIKDGQ 287

  Fly   303 MQKILARKEVILSAGAINTPQLLMLSGVGPAKHLREMGIKPLADL-AVGYNLQDHIAPAISFLCN 366
            ..|....:|||||.||||:||||||||||.|..|:::||..:..| .||.|||||:...|...|.
  Rat   288 SHKAYVSREVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQHACT 352

  Fly   367 VS-SLQTSE--------------MFRSEAMSDFLKGRGVLRIPGGV--EAISFY-----ALDDAR 409
            .. :|.:::              .|..:..:..|:..|.:|...||  ..|.|:     .:|..|
  Rat   353 QPITLHSAQKPLRKVCIGLEWLWRFTGDGATAHLETGGFIRSRPGVPHPDIQFHFLPSQVIDHGR 417

  Fly   410 NPDAWADMELFVVGGGLQTNLALRLALGIQSNIYETMFGELERQSANGFLIFPMILRAKSRGRIK 474
            .|                          .|...|:...|               .:||.|.|.:|
  Rat   418 KP--------------------------TQQEAYQVHVG---------------TMRATSVGWLK 441

  Fly   475 LKSRNPEEHPRIYANYFANPYDMNITVRGIEQAVSL----LDMPAFKAI-------GAHL-LEKR 527
            |:|.||::||.|..||.:...|    |....|.|.|    ....||...       |:|: .:|.
  Rat   442 LRSTNPQDHPMINPNYLSTETD----VEDFRQCVKLTREIFAQEAFAPFRGKELQPGSHVQSDKE 502

  Fly   528 IPNCAKYKWKSSAYWACYARHFTFTIYHYSGTAKMGPRSDPSAVVDARLRVHGIDKLRVVDASIM 592
            |....:.|..|:              ||.|.|.|||..|||:||||.:.||.|::.|||:|||||
  Rat   503 IDAFVRAKADSA--------------YHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIM 553

  Fly   593 PYLISGHPNGPVYLIAEKAADMIK 616
            |.::||:.|.|..:|||||||:||
  Rat   554 PSVVSGNLNAPTIMIAEKAADVIK 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9519NP_572978.1 PRK02106 59..616 CDD:235000 214/607 (35%)
NADB_Rossmann 63..>99 CDD:304358 25/35 (71%)
NADB_Rossmann 132..356 CDD:304358 95/231 (41%)
GMC_oxred_C 468..611 CDD:282984 58/154 (38%)
ChdhNP_942026.1 PRK02106 45..591 CDD:235000 216/609 (35%)
NADB_Rossmann 49..>151 CDD:304358 49/107 (46%)
GMC_oxred_N 121..344 CDD:279121 97/233 (42%)
GMC_oxred_C 435..572 CDD:282984 58/154 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 244 1.000 Domainoid score I2129
eggNOG 1 0.900 - - E1_COG2303
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 342 1.000 Inparanoid score I2269
OMA 1 1.010 - - QHG52181
OrthoDB 1 1.010 - - D173099at33208
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm44531
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X135
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.780

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