DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rut and phlp-2

DIOPT Version :9

Sequence 1:NP_511156.2 Gene:rut / 32406 FlyBaseID:FBgn0003301 Length:2248 Species:Drosophila melanogaster
Sequence 2:NP_001337270.1 Gene:phlp-2 / 185690 WormBaseID:WBGene00009647 Length:1126 Species:Caenorhabditis elegans


Alignment Length:850 Identity:156/850 - (18%)
Similarity:278/850 - (32%) Gaps:292/850 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   657 NRVNRFLSQAINARSVDCDKSEHVD--RLT-LRFRQSDMEREYHKDFDLGFTTAMGCSLLLL--- 715
            :||.....|.|:.|....|.|..:|  .:| |..|.:.|....|.. :|.|...:.|..|.|   
 Worm   394 DRVGEMQIQKIDLRRNVLDTSFRLDIENITHLDLRDNSMISTVHLT-NLRFLKVIHCERLQLSSL 457

  Fly   716 -ILGAALQVTALPRTLILLLLFLFAFIWVSAILMLLLAVRLKWIIWDISESFSLRMAITIFTVIL 779
             :.|.:|........|:            .:::::.|...|:          :|.::...|.   
 Worm   458 HLSGESLTHVYADHNLL------------DSLVVMPLPQNLQ----------TLSLSFNHFR--- 497

  Fly   780 IYSVGQVNVFTCVSDHPCSGNGTTSFQNDSHRKCSLPQYV----SLSAAFAFLSVSVFLRLPIIF 840
                   |:...:||.|    ..|..:.:::...:||:.:    ||.:.|||::           
 Worm   498 -------NLPDWISDCP----NLTFLRANNNSLVALPERIFYSQSLRSIFAFIN----------- 540

  Fly   841 KSLLVLGMGTIYGLFIELSH------QNIFE---CYDNRVNASIPLHLISLARIAIFMIAILVHG 896
                            |:.|      :|..|   .|.|:: :|:|.|..|:              
 Worm   541 ----------------EIEHIPDFGEENCLETLILYKNKL-SSLPKHFFSI-------------- 574

  Fly   897 RLVEGTARLDFLWQLQASQEKKE------------MDVLQESNKRILHNLLPAHVAAHFLDAQFR 949
                    |..|.||..|....|            :.:|:.:|..:..|.:|..|.        .
 Worm   575 --------LPRLRQLNISSNFIELLPYFDGSSFCRLQILRCANNYLTENSVPVIVN--------M 623

  Fly   950 NNMELYHQSYAKVGVIFASVPNFNEFYTEMDGSDQGL----ECLRL---LNEIIADFDELLKEDR 1007
            .::::...|:.::.....|..:..|...:::.|...|    :||.|   |..:.|..::|:....
 Worm   624 KHLKIIDLSHNRLNSFDDSALSSLELLEDLNLSSNRLTRLADCLALLPCLQVLRAHSNQLVHVPE 688

  Fly  1008 FRGIDKIKTVG-STYMAVVGLIPEYKIQPNDPNSVRRHMTALIEY---------VKAMRHSLQ-- 1060
            ||..:::.|:. |:....:|.: ::|..||     .||.......         ..|..||..  
 Worm   689 FRASNQLHTIDVSSNNISLGTL-QFKAPPN-----LRHFDVTCNSGDFDTENFPENAKMHSKMNT 747

  Fly  1061 -EINSHSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGY---------- 1114
             .|:..|.|.|..::|      |:|..|.:..|........|....:|. |...|          
 Worm   748 INISEGSQNLFGFQIG------VSGSRGMKNKQCIRQVRVENTFGFIDG-GSNSYMSSSICRFMT 805

  Fly  1115 ----SQVTQEVVDSLVGSHFEFRCRGTIKVKGKGDMVTYFLCDSGNKSL----NGEVRNAMSLPQ 1171
                ..|:.::...|:      ||...:..:|:....:..:.....|.|    .|.:..|::..|
 Worm   806 SYLKENVSMDIRSILL------RCHCELGEEGERLGASVMIIRVHEKRLEIASTGTMSAAIARNQ 864

  Fly  1172 SLHA---------PDYYMKVSQF-----PENRVNTDTYSKKENGHLYAGNGVEEQQLLLQHQHKQ 1222
            .|..         .|.|.::.:.     .|||:|....|.::.||.                  .
 Worm   865 KLKMIINGRYEIDDDEYSRIREAHGFVDEENRINGVIGSSRQIGHF------------------S 911

  Fly  1223 HDPLPLPAPPPPVHHHLHQQQQQRLNSKLQKQPIFMANGGLPNIRE----NGNGHNGEH-----Q 1278
            ..|:.||.         |..:..:||.::  :.:.:.|..:.|:..    |...||...     :
 Worm   912 TFPVVLPT---------HSYRNIQLNEQI--EGLIVGNNMIWNMLSIDDLNSTFHNNRSPIVVAK 965

  Fly  1279 QQQQQQQQHQ----------QQQQQQQQHGGFMVATT----TPPAAV---------AVP--LQPQ 1318
            :.|.|.|.:.          ::.:.|....||..::|    ||..|:         |||  :.|:
 Worm   966 KIQDQLQSYDYGGNSNILVLRRIKPQMTFNGFSTSSTKNQVTPDIAIPKIDEQLVLAVPALILPE 1030

  Fly  1319 HHQL--------QFQH----PHQHPLPSAVSVPVQHQILLHHQLQLQHQPVPSVMLREFNIIENP 1371
            :|..        ..:|    |...||||:...||..          :|:        |.|:.::.
 Worm  1031 YHPSPPVPPPIPAIRHRTPSPPPPPLPSSTPPPVSS----------EHE--------EINVRQSS 1077

  Fly  1372 T-SGG 1375
            | |||
 Worm  1078 TLSGG 1082

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rutNP_511156.2 AC_N <17..255 CDD:292831
CYCc 230..425 CDD:214485
Guanylate_cyc 266..438 CDD:278633
DUF1053 624..696 CDD:283888 12/41 (29%)
SLC5-6-like_sbd <742..>893 CDD:294310 26/163 (16%)
CYCc 924..1134 CDD:214485 43/243 (18%)
Guanylate_cyc 954..1151 CDD:278633 42/230 (18%)
phlp-2NP_001337270.1 leucine-rich repeat 232..253 CDD:275380
leucine-rich repeat 254..288 CDD:275380
PLN00113 283..>718 CDD:331614 77/424 (18%)
leucine-rich repeat 289..311 CDD:275380
leucine-rich repeat 312..334 CDD:275380
leucine-rich repeat 335..357 CDD:275380
leucine-rich repeat 358..379 CDD:275380
leucine-rich repeat 380..440 CDD:275380 13/46 (28%)
leucine-rich repeat 441..485 CDD:275380 9/55 (16%)
leucine-rich repeat 486..508 CDD:275380 7/45 (16%)
leucine-rich repeat 509..534 CDD:275380 5/24 (21%)
leucine-rich repeat 554..577 CDD:275380 8/45 (18%)
leucine-rich repeat 578..602 CDD:275380 5/23 (22%)
leucine-rich repeat 603..625 CDD:275380 5/29 (17%)
leucine-rich repeat 626..649 CDD:275380 2/22 (9%)
leucine-rich repeat 650..672 CDD:275380 5/21 (24%)
leucine-rich repeat 673..694 CDD:275380 5/20 (25%)
PP2Cc 754..985 CDD:214625 46/272 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2114
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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