DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5347 and trim3b

DIOPT Version :9

Sequence 1:NP_572970.1 Gene:CG5347 / 32403 FlyBaseID:FBgn0030578 Length:285 Species:Drosophila melanogaster
Sequence 2:XP_005155434.1 Gene:trim3b / 555391 ZFINID:ZDB-GENE-070112-1132 Length:772 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5347NP_572970.1 ZnF_C3H1 4..30 CDD:214632
PHA03096 <80..239 CDD:222981
RING 159..213 CDD:238093
trim3bXP_005155434.1 RING-HC_TRIM3 24..68 CDD:319682
RING-HC finger (C3HC4-type) 27..67 CDD:319682
BBOX 118..159 CDD:197662
BBC 166..291 CDD:128778
Filamin 333..424 CDD:306978
NHL_TRIM2_like 479..772 CDD:271330
NHL repeat 497..536 CDD:271330
NHL repeat 544..583 CDD:271330
NHL repeat 586..623 CDD:271330
NHL repeat 630..691 CDD:271330
NHL repeat 697..739 CDD:271330
NHL repeat 742..768 CDD:271330
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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