DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5334 and ZFN3

DIOPT Version :10

Sequence 1:NP_572969.1 Gene:CG5334 / 32402 FlyBaseID:FBgn0030577 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_851041.1 Gene:ZFN3 / 831516 AraportID:AT5G16540 Length:375 Species:Arabidopsis thaliana


Alignment Length:194 Identity:44/194 - (22%)
Similarity:66/194 - (34%) Gaps:48/194 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 FDDLCRYSH--DVLQNDNLRPQISNNADEVVG----HANRYSRPMTGANATEEMKLSFAIAKSQD 80
            ||.:.|.|.  ..|.|.|...|::..:|:.:|    :..|:..|                     
plant     3 FDSISRESTFLSPLLNQNAMWQMNLGSDDTMGVDGSYPERHGEP--------------------- 46

  Fly    81 KMCGICLETVVKKRGRECRFGILPKCKHIFCLTCIRRWRQAEYIEDNVKRGCPECRVFSEF-VCP 144
             .|...:.|.:.:.|..|||......|.:.....|:    .||.|   :.|.|||..:.:. .|.
plant    47 -DCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIK----GEYPE---RIGQPECEFYLKTGTCK 103

  Fly   145 SAYWVDTKEEKDK----------LLSEYRAAMGAKDCKYFNGGLGKCPFGTNCFYNHRSLAGDN 198
            ..........::|          :|| |.......||.||. .:|:|.||..|.:||......|
plant   104 FGVTCKFHHPRNKAGIDGSVSVNVLS-YPLRPNEDDCSYFL-RIGQCKFGGTCKFNHPQTQSTN 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5334NP_572969.1 RING-HC_MKRN 81..136 CDD:438184 14/54 (26%)
ZFN3NP_851041.1 zf-CCCH 44..68 CDD:459885 7/45 (16%)
zf-CCCH 89..114 CDD:459885 5/24 (21%)
zf-CCCH 134..160 CDD:459885 11/26 (42%)
zf-CCCH 244..270 CDD:459885
zf-CCCH 290..316 CDD:459885
Blue background indicates that the domain is not in the aligned region.

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