DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5334 and Mkrn2

DIOPT Version :10

Sequence 1:NP_572969.1 Gene:CG5334 / 32402 FlyBaseID:FBgn0030577 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_001008315.1 Gene:Mkrn2 / 297525 RGDID:1310618 Length:417 Species:Rattus norvegicus


Alignment Length:192 Identity:80/192 - (41%)
Similarity:113/192 - (58%) Gaps:7/192 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TSSRQNLHKICRYRLRGNCRFDDLCRYSH-DVLQNDNLRPQISNNADEVVGHANRYSRPMTGANA 65
            :||..|..::|.|...|.|||.|.|.|.| |:.:...|:.....:.::...|     ..|..:..
  Rat   162 SSSYSNEQQLCPYAAAGECRFGDACVYLHGDMCEICRLQVLHPFDPEQRKAH-----EKMCMSTF 221

  Fly    66 TEEMKLSFAIAKSQDKMCGICLETVVKK-RGRECRFGILPKCKHIFCLTCIRRWRQAEYIEDNVK 129
            ..||:.:||...||||:|.||:|.:::| ...|.|||||..|.|.:||:|||:||.|:..|:.:.
  Rat   222 EHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCSHTYCLSCIRQWRCAKQFENPII 286

  Fly   130 RGCPECRVFSEFVCPSAYWVDTKEEKDKLLSEYRAAMGAKDCKYFNGGLGKCPFGTNCFYNH 191
            :.||||||.||||.||.|||:.:.:|::|:..::..||.|.||||..|.|.||||:.|.|.|
  Rat   287 KSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRH 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5334NP_572969.1 RING-HC_MKRN 81..136 CDD:438184 26/55 (47%)
Mkrn2NP_001008315.1 zf-CCCH_3 1..>55 CDD:464787
zf_CCCH_4 37..55 CDD:465719
PHA03096 <179..328 CDD:222981 61/153 (40%)
RING-HC_MKRN2 236..293 CDD:319645 27/56 (48%)
Blue background indicates that the domain is not in the aligned region.

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