DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5334 and Mkrn1

DIOPT Version :10

Sequence 1:NP_572969.1 Gene:CG5334 / 32402 FlyBaseID:FBgn0030577 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_001385662.1 Gene:Mkrn1 / 296988 RGDID:1303251 Length:481 Species:Rattus norvegicus


Alignment Length:215 Identity:89/215 - (41%)
Similarity:117/215 - (54%) Gaps:29/215 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KICRYRLRGNCRFDDLCRYSH----DVLQNDNLRPQISNNADEVVGHANRYSRPMTGANATE-EM 69
            ::|.|...|.||:.:.|.|.|    |:.....|.|         :..|.|.....:...|.| :|
  Rat   212 QLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHP---------MDAAQRSQHIKSCIEAHEKDM 267

  Fly    70 KLSFAIAKSQDKMCGICLETVVKKRG-RECRFGILPKCKHIFCLTCIRRWRQAEYIEDNVKRGCP 133
            :||||:.:|:|.:||||:|.|.:|.. .|.|||||..|.|.:||.|||:||.|:..|..:.:.||
  Rat   268 ELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCP 332

  Fly   134 ECRVFSEFVCPSAYWVDTKEEKDKLLSEYRAAMGAKDCKYFNGGLGKCPFGTNCFYNH------- 191
            |||:.|.||.||.|||:.||||.||:.:|:.||..|.|:||:.|.|.||||.||||.|       
  Rat   333 ECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRR 397

  Fly   192 ----RSLAGDN---RIQRHS 204
                |...|.:   |.||.|
  Rat   398 EEPQRQKVGTSSRYRAQRRS 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5334NP_572969.1 RING-HC_MKRN 81..136 CDD:438184 27/55 (49%)
Mkrn1NP_001385662.1 zf-CCCH_4 59..80 CDD:465626
ZnF_C3H1 88..110 CDD:214632
PHA03096 <221..370 CDD:222981 66/157 (42%)
RING-HC_MKRN1_3 278..338 CDD:319644 30/59 (51%)
MKRN1_C 392..481 CDD:464890 6/26 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.