DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5334 and Mkrn3

DIOPT Version :10

Sequence 1:NP_572969.1 Gene:CG5334 / 32402 FlyBaseID:FBgn0030577 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_001386880.1 Gene:Mkrn3 / 292988 RGDID:1311197 Length:528 Species:Rattus norvegicus


Alignment Length:186 Identity:85/186 - (45%)
Similarity:110/186 - (59%) Gaps:13/186 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ICRYRLRGNCRFDDLCRYSH----DVLQNDNLRPQISNNADEVVGHANRYSRPMTGANATEEMKL 71
            :|||..||.|...|.|.|.|    |:.....|.|.     |.....|:|  |....|: ..:|:|
  Rat   263 LCRYAARGQCLRGDRCAYPHGEICDMCGQQALHPW-----DAAQQEAHR--RACVEAH-ERDMEL 319

  Fly    72 SFAIAKSQDKMCGICLETVVKKRG-RECRFGILPKCKHIFCLTCIRRWRQAEYIEDNVKRGCPEC 135
            |||:.:|.||:||||:|.|.:|.. .:.|||||..|.|.:||.||||||.|...|:.:.:.||:|
  Rat   320 SFAVQRSMDKVCGICMEVVYEKADPSDRRFGILFSCNHTYCLKCIRRWRSATQFENRISKSCPQC 384

  Fly   136 RVFSEFVCPSAYWVDTKEEKDKLLSEYRAAMGAKDCKYFNGGLGKCPFGTNCFYNH 191
            ||.|.||.||.:||:.:|||:||:.:|:..|..|.|:||.||||.||||..|||.|
  Rat   385 RVSSGFVIPSEFWVEEEEEKEKLVQQYKEGMSQKACRYFAGGLGHCPFGEFCFYKH 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5334NP_572969.1 RING-HC_MKRN 81..136 CDD:438184 27/55 (49%)
Mkrn3NP_001386880.1 zf-CCCH_4 96..117 CDD:465626
PHA03096 <272..420 CDD:222981 65/155 (42%)
RING-HC_MKRN1_3 328..388 CDD:319644 31/59 (53%)
MKRN1_C 442..528 CDD:464890
Blue background indicates that the domain is not in the aligned region.

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