DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and lama1

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001030158.1 Gene:lama1 / 569971 ZFINID:ZDB-GENE-060118-1 Length:3075 Species:Danio rerio


Alignment Length:700 Identity:162/700 - (23%)
Similarity:240/700 - (34%) Gaps:266/700 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RMGLLLPIILALAIGSSAAGISSNDPCYFEGKPRKCLPSFVNAAYGNPVQASSVCGAQQPERYCE 72
            ||.:|.  :|||...|...         .|.:.|...|:.:|.|....:..::.||...||.:|:
Zfish     5 RMKMLW--LLALVFSSVIC---------VEAQQRGLFPAILNLASNAEISTNATCGDPDPEMFCK 58

  Fly    73 LL-----RDGNAGECRSCEQQRYGPAALTDLNNPSNVT--CWRSGAVNVPHDPDSAPPDN----- 125
            |:     |.....:||.|:.....|.....:.|..:.|  .|:|.::.           |     
Zfish    59 LVEHVPGRRIRNPQCRICDANSQNPKEQHPITNAIDGTNLWWQSPSIK-----------NGRQFH 112

  Fly   126 -VTLTLSLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYS---SQCQKFYGRPDR 186
             ||:||.|.:.:::.||.:. ...||||.:..:.:|.| |..:||:|||:   ::|...|....|
Zfish   113 WVTVTLDLRQVFQVAYIIIK-AANSPRPGNWILERSLD-GVNFQPWQFYAISDTECLTRYNITPR 175

  Fly   187 AKISKFNEQE--------ARCINSQHDTGGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIR 243
            .....:...:        :|.:..:|.      ....:.:.|||||:||...|:  ::.:|..||
Zfish   176 IGPPTYKRDDEVICTSYYSRLVPLEHG------EIHTSLINGRPSADDLTPELL--EFTSARFIR 232

  Fly   244 VVFHRLELPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEY 308
            :         :|.:::..||  |.|..|                                    |
Zfish   233 L---------RLQRIRTLNA--DLMTLS------------------------------------Y 250

  Fly   309 EEPKKHLELDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTP 373
            .:||                |.:.:|.|:                                    
Zfish   251 RDPK----------------DVDPIVTRR------------------------------------ 263

  Fly   374 PSTAAPSAAASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTP 438
                              .:|::.|.:|||.|.|.|||..|                       |
Zfish   264 ------------------YYYSIKDISVGGMCICYGHAQSC-----------------------P 287

  Fly   439 SAPSLANHFGRSTQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGH 503
            ..|           ::.||  .|.|:|||.|..|..|.|.|...||...|.:|.|.|:.|.|:..
Zfish   288 WDP-----------VTKKL--QCVCEHNTCGESCNECCPGYHQEPWQPGTLSDGNTCEKCNCHNK 339

  Fly   504 ARRCRFNLEL--YKLS----GR-VSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRC 561
            |..|.:|..:  .|||    |: ..||||.||:|:|.|..|..|.:||||.....|...:.|..|
Zfish   340 ADDCFYNQTVADLKLSMNTHGQFTGGGVCVNCRHNTAGVNCETCADGYYRPHQVSPYAEEPCVEC 404

  Fly   562 DCHPVGSTGKTC----NHLS-------GQCPCKEGVTGLTCNRCARGYQQ-----------TRSH 604
            .|...||....|    ||.:       |||.||||..|..|:|||.|::.           ..||
Zfish   405 QCDMRGSVSPVCIRDDNHANPDAGLSPGQCVCKEGFAGEKCDRCAFGFRDFPVCSRCECNLDGSH 469

  Fly   605 -VAPCIKVPTNANMIQAESAGGGGGGGTGDYKDGGGSQVEEMKKYCGKCK 653
             ..||::....||:                           |..:|..||
Zfish   470 NTDPCMECVCKANV---------------------------MGSHCDLCK 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 57/247 (23%)
EGF_Lam <458..484 CDD:238012 10/25 (40%)
EGF_Lam 498..555 CDD:238012 25/63 (40%)
EGF_Lam 560..608 CDD:238012 22/70 (31%)
NTR_netrin-1_like 661..791 CDD:239634
lama1NP_001030158.1 LamNT 25..275 CDD:214532 70/387 (18%)
EGF_Lam 277..324 CDD:238012 22/82 (27%)
EGF_Lam <364..390 CDD:238012 14/25 (56%)
Laminin_EGF 404..463 CDD:278482 20/58 (34%)
Laminin_EGF 461..506 CDD:278482 9/58 (16%)
Laminin_B 571..699 CDD:278481
EGF_Lam 744..792 CDD:238012
Laminin_EGF 809..849 CDD:278482
EGF_Lam 851..903 CDD:238012
Laminin_EGF 905..951 CDD:278482
Laminin_EGF 954..1001 CDD:278482
EGF_Lam 1000..1045 CDD:238012
Laminin_EGF 1047..1095 CDD:278482
Laminin_EGF 1093..1149 CDD:278482
Laminin_B 1221..1346 CDD:278481
EGF_Lam <1365..1385 CDD:238012
Laminin_EGF 1407..1453 CDD:278482
Laminin_EGF 1456..1509 CDD:278482
Laminin_EGF 1512..>1549 CDD:278482
Laminin_I 1580..1842 CDD:283627
Baculo_PEP_C 1581..1711 CDD:282382
Laminin_II 2015..2148 CDD:283628
LamG 2133..2281 CDD:238058
LamG 2310..2466 CDD:238058
LamG 2491..2641 CDD:238058
Laminin_G_1 2750..2877 CDD:278483
LamG 2897..3048 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.