DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and ntn4

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_009301345.1 Gene:ntn4 / 561440 ZFINID:ZDB-GENE-050310-1 Length:639 Species:Danio rerio


Alignment Length:782 Identity:197/782 - (25%)
Similarity:295/782 - (37%) Gaps:248/782 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 RKCLPSFVNAAYGNPVQASSVCGAQQPERYCELLRDGNAGECRSCE----QQRYGPAALTDLNNP 101
            |.|.|...|.|.|.|:|..|.||:..||::|....|....:|..|:    |..:.|:::||....
Zfish    77 RVCNPRMGNLAVGRPIQTVSQCGSTSPEQFCMYRPDSCVLDCEICDASVSQHAHSPSSMTDSPFK 141

  Fly   102 SNVTCWRSGAVNVPHDPDSAPPDNV-TLTLSLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQ 165
            ..:|.|:           |||...: ||.|.|..::..|::.:.|  .||||.::||.:|.||||
Zfish   142 QPLTWWQ-----------SAPGTAIETLQLDLEVEFYFTHLIIIF--MSPRPAAMAIDRSRDFGQ 193

  Fly   166 TWQPFQFYSSQCQKFYGRPDRAK-ISKFNEQEARCINSQHDTGGAAQRFAFNTLEGRPSANDLDS 229
            ||.....:|..|.:.....|..: .:|::..|. |.|.:                          
Zfish   194 TWSLLMLFSHNCSEVSSLEDGQRCTAKYSSAEP-CTNGE-------------------------- 231

  Fly   230 SLVLQDWVTATDIRVVFHRLELPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYN 294
                          |::..|                                             
Zfish   232 --------------VIYRAL--------------------------------------------- 237

  Fly   295 LQDNDSADAGYDEYEEPKKHLELDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPP 359
                           .|.:.|:        .|::|..|:                   |..|...
Zfish   238 ---------------SPYERLD--------PYSTDARSL-------------------LGVTNVR 260

  Fly   360 QQPPKVTPPGKVTPPSTAAPSAAASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGT 424
            .:        .:.|.|...|.|.|:|.|    ..||:||..:.|.|.|:|||.:||.|       
Zfish   261 IR--------LLQPHSCPCPIADANAAT----PRYAISDLILKGGCLCHGHADQCVPT------- 306

  Fly   425 ALSDQDDGQDEDTPSAPSLANHFGRSTQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATD 489
                   |...::.:       ||:.. :..|    |.|:|:|||..||||...|.|||| ||.|
Zfish   307 -------GGKHNSKT-------FGKHV-VHGK----CLCRHHTAGDHCERCHRLYNDRPW-RAAD 351

  Fly   490 ---NDANECKMCQCNGHARRCRFNLELYKLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKP 551
               .:||:|..|:|||||..|.|:..::..||:..|||| :|.|:|||::|.:|:.|:|||..||
Zfish   352 GLTGEANQCVECKCNGHAESCHFDESVWLRSGQQHGGVC-DCLHNTTGQHCQHCQSGFYRDPEKP 415

  Fly   552 PNHRKVCKRCDCHPVGSTGKTCNHLSGQCPCKEGVTGLTCNRCARGYQQTRSH-VAPC-----IK 610
            ......|..|.|:.|||:  .|...:|:|.||.||.|..|.:|..||.....: ..||     ..
Zfish   416 STAPDSCTPCMCNHVGSS--YCKPDNGECVCKPGVAGRHCEQCMLGYWGLDEYGCKPCQCAGDCD 478

  Fly   611 VPTNANMIQAESAGGGGGGGTGDYKDGGGS------QVEEM---KKYCGKCKASPKKLNLNK-FC 665
            ..|...||::||             |...:      :.||:   ..:..||....:.|..:| ||
Zfish   479 PYTGDCMIRSES-------------DDNSTAENHLFRTEELFSALSHPDKCICKQQALGNSKVFC 530

  Fly   666 MED--YAILAKVIG-HDRASQ-DISTEKFSIERQNEIYKYEINIQTIFKRNPMSGTTSSLLGRGN 726
            ...  ||:..:|:| ||:.|. ::..:...:...|...:.....:|::..:.||        || 
Zfish   531 NAKYAYAVKVRVLGAHDKGSHAEVDVKILKVLWDNTRLRLSRGSRTLYPESWMS--------RG- 586

  Fly   727 MMLLVPRKSIECQCPKIKLNKSYLILGRDSEAAPGYLAIGPSSVVLEWKDEWSLRMKRFQRRARK 791
                       |.||.:.....||::|.: :...|...:...|:|..|:.  ||..|..|....|
Zfish   587 -----------CTCPVLFPGLEYLVVGHE-DVRKGRPVVNMKSIVKPWRA--SLSRKVHQLLKTK 637

  Fly   792 CS 793
            ||
Zfish   638 CS 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 54/225 (24%)
EGF_Lam <458..484 CDD:238012 13/25 (52%)
EGF_Lam 498..555 CDD:238012 27/56 (48%)
EGF_Lam 560..608 CDD:238012 17/48 (35%)
NTR_netrin-1_like 661..791 CDD:239634 30/134 (22%)
ntn4XP_009301345.1 Laminin_N 89..292 CDD:278484 67/355 (19%)
EGF_Lam 294..351 CDD:238012 29/83 (35%)
Laminin_EGF 363..422 CDD:278482 27/59 (46%)
EGF_Lam 425..468 CDD:214543 17/44 (39%)
NTR_netrin-4_like 526..637 CDD:239633 30/133 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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