DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and lamb1b

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001264059.1 Gene:lamb1b / 556605 ZFINID:ZDB-GENE-041210-197 Length:1767 Species:Danio rerio


Alignment Length:613 Identity:144/613 - (23%)
Similarity:229/613 - (37%) Gaps:211/613 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IILALAIGSSAAGISSNDPCYFEGKPRKCLPSFVNAAYG--NPVQASSVCGAQQPERYC--ELLR 75
            :::::|:.:.|.....||.| .||   .|.|:..:...|  :.:.|||.||...||.:|  .:|.
Zfish     9 LVISIALHTLAQLPDHNDMC-AEG---SCYPATGDLLIGRAHRLTASSTCGLNSPEEFCMVNILE 69

  Fly    76 DGNAGECRSCEQQR-YGPAALTDLNNPSNV----------TCWRS--GAVNVPHDPDSAPPDNVT 127
            |   ..|..|:.:| |......|.:...||          |.|:|  |.            :|||
Zfish    70 D---TVCFECDSRRLYNEFTHPDSHTIENVVTTFAPNRLKTWWQSENGV------------ENVT 119

  Fly   128 LTLSLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKFYGRPDRAKISKF 192
            :.|.|..::..|::.::|  |:.||.::.|.:|:|:|:|||.:::|:..|.:.|....:..|.|.
Zfish   120 IQLDLEAEFHFTHLIMTF--RTFRPAAMLIERSADYGRTWQVYRYYAFNCDESYPHVPKGPIKKV 182

  Fly   193 NEQ--EARCINSQHDTGGAAQRFAFNTLEGRPSANDLDS-SLVLQDWVTATDIRVVFHRLELPPQ 254
            ::.  ::|....:..|.|   ...|..|:  |:....|. |..:|:.:..|::|:...:|.    
Zfish   183 DDVICDSRYSGMEPSTEG---EVIFRVLD--PAFKIPDPYSPHIQNLLKITNLRIAMEKLH---- 238

  Fly   255 LLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLELDD 319
                        ::|           ||                                     
Zfish   239 ------------KLG-----------DL------------------------------------- 243

  Fly   320 DHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSAAAS 384
                                   |.|.|..:.|                                
Zfish   244 -----------------------SNYRKEARKK-------------------------------- 253

  Fly   385 AVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFGR 449
                   ..|||.|..:.|.|.|.||||:|                         ||     .|.
Zfish   254 -------YFYAVYDMVIRGNCFCYGHASKC-------------------------AP-----IGN 281

  Fly   450 STQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFNLELY 514
            ...:...:...|.|.|:|.|..||.|:.||.|:||..|...:.|.||.|:||.|:..|.|::.:|
Zfish   282 EAGVEGMVHGHCMCNHHTTGLNCEECEDFYQDQPWRPAVGRETNACKKCECNRHSDSCHFDMAVY 346

  Fly   515 KLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCHPVGS---------TG 570
            ..||..|||||.:|:|:|.|::|..|:..||:...:.....::|:.|||.|.||         |.
Zfish   347 LSSGNRSGGVCDDCEHNTQGQWCENCKPFYYKHPQRDIRDPRICEPCDCDPRGSLYEGLCDSATN 411

  Fly   571 KTCNHLSGQCPCKEGVTGLTCNRCARGY 598
            ...:.::|||.||..|.|..|:.|.:|:
Zfish   412 VMRDMIAGQCHCKANVEGQRCDHCKKGH 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 60/243 (25%)
EGF_Lam <458..484 CDD:238012 11/25 (44%)
EGF_Lam 498..555 CDD:238012 22/56 (39%)
EGF_Lam 560..608 CDD:238012 17/48 (35%)
NTR_netrin-1_like 661..791 CDD:239634
lamb1bNP_001264059.1 Laminin_N 42..265 CDD:278484 67/370 (18%)
EGF_Lam 267..318 CDD:238012 23/80 (29%)
EGF_Lam 392..450 CDD:238012 17/48 (35%)
EGF_Lam 451..502 CDD:238012
EGF_Lam 504..542 CDD:214543
CBM6-CBM35-CBM36_like 551..>610 CDD:301364
Laminin_EGF 759..807 CDD:278482
Laminin_EGF 807..855 CDD:278482
EGF_Lam 852..890 CDD:238012
EGF_Lam 902..957 CDD:238012
EGF_Lam 961..1012 CDD:238012
Laminin_EGF 1014..1067 CDD:278482
Laminin_EGF 1070..1118 CDD:278482
EGF_Lam 1118..1162 CDD:214543
MA 1414..1675 CDD:214599
TelA <1532..1607 CDD:283473
Syntaxin_2 <1697..1764 CDD:291208
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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