DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and LanB1

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster


Alignment Length:725 Identity:178/725 - (24%)
Similarity:263/725 - (36%) Gaps:247/725 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 PCYFEGKPRKCLPSFVNAAYG--NPVQASSVCGAQQPERYCEL--LRDGNAGECRSCEQQRYGP- 92
            ||    :...|.|:..|...|  |.:.|||.||...|||:|.|  |:|.....|.:.|:.::.| 
  Fly    48 PC----ERSSCYPATGNLLIGRENRLTASSTCGLHSPERFCILSHLQDKKCFLCDTREETKHDPY 108

  Fly    93 -----AALTDLNNP-SNV-TCWRSGAVNVPHDPDSAPPDNVTLTLSLGKKYELTYISLSFCPRSP 150
                 ..:.....| :|: |.|:|          ....:|.|:.|.|..::..|::.::|  .:.
  Fly   109 KNHRIGQIIYKTKPGTNIPTWWQS----------ENGKENATIQLDLEAEFHFTHLIITF--TTF 161

  Fly   151 RPDSLAIFKSSDFGQTWQPFQFYSSQC-QKFYGRPDRAKISKFNEQEARCINSQHDTGGAAQRFA 214
            ||.::.|.:|.||||||..:::::..| :.|.|.|...:    |..:..|.:            .
  Fly   162 RPAAMYIERSFDFGQTWHIYRYFAYDCKESFPGVPTVLE----NITDVMCTS------------R 210

  Fly   215 FNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLELPPQLLKVKNANAFSDEMGGSREEDEDDD 279
            ::.:|  ||.|.                .|:|.  .|||.:                        
  Fly   211 YSNVE--PSRNG----------------EVIFR--VLPPNI------------------------ 231

  Fly   280 ADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLELDDDHLHLDYASDGESVVKRQGKHKGSA 344
                          |:.|                                              .
  Fly   232 --------------NVTD----------------------------------------------P 236

  Fly   345 YEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSAAASAVTLPISQHYAVSDFAVGGRCKCNG 409
            |.:|.|::|..|....|..|:...|         .:...|.:......:|.:|:..|.|.|.|.|
  Fly   237 YAEHVQNQLKMTNLRIQMTKLHKLG---------DNLLDSRLENEEKYYYGISNMVVRGSCSCYG 292

  Fly   410 HASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFGRSTQMSAKLTMTCACKHNTAGPECER 474
            |||:|:....:.|   .:|.:||...            ||           |.|.|||.|..||.
  Fly   293 HASQCLPLDPAFS---QADNEDGMVH------------GR-----------CECTHNTKGMNCEE 331

  Fly   475 CKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFNLELYKLSGRVSGGVCYNCQHDTTGRYCHY 539
            |:.|:.|.||..|.....|.||.|:||.||..|.|:..::..||.||||||.||.|:|.|::|..
  Fly   332 CEDFFNDLPWKPAFGKKTNACKKCECNDHAVSCHFDEAVFTASGFVSGGVCDNCLHNTRGQHCEE 396

  Fly   540 CREGYYRDATKPPNHRKVCKRCDCHPVGSTGK-TCNHL--------SGQCPCKEGVTGLTCNRCA 595
            |...:|||..:.....:||:.|||.|.||:.. .|:.|        :|.|.||..|||..||:|.
  Fly   397 CMPYFYRDPEQDITSERVCQPCDCDPQGSSDDGICDSLNELEEGAVAGACHCKAFVTGRRCNQCK 461

  Fly   596 RGYQQTRSH----VAPCIKVP----TNANMIQAESAGGGGGGGTGDYKDGGGSQVEEMKKY---- 648
            .||...:|.    ..||...|    .|:..:..          ||:.|         .|||    
  Fly   462 DGYWNLQSDNPEGCEPCTCNPLGTLNNSGCVMR----------TGECK---------CKKYVTGK 507

  Fly   649 -CGKC-------KASPKKLNLNKFCMED----YAILAKVI-GHDRASQDISTEKFSIERQN---- 696
             |.:|       ..||:..:|   |..|    |.....|| |..|....::....|..:||    
  Fly   508 DCNQCMPETYGLSESPEGCSL---CNCDAGGSYDNYCDVISGQCRCRPHMTGRSCSQPKQNYFIP 569

  Fly   697 ---EIYKYEI 703
               |:::.|:
  Fly   570 LLPEVHEAEV 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 56/236 (24%)
EGF_Lam <458..484 CDD:238012 11/25 (44%)
EGF_Lam 498..555 CDD:238012 25/56 (45%)
EGF_Lam 560..608 CDD:238012 21/60 (35%)
NTR_netrin-1_like 661..791 CDD:239634 13/55 (24%)
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484 67/363 (18%)
EGF_Lam 287..343 CDD:238012 26/81 (32%)
Laminin_EGF 355..415 CDD:278482 25/59 (42%)
Laminin_EGF 418..475 CDD:278482 21/56 (38%)
EGF_Lam 477..526 CDD:238012 14/67 (21%)
EGF_Lam 529..567 CDD:214543 10/37 (27%)
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:278482
Laminin_EGF 883..930 CDD:278482
Laminin_EGF 933..988 CDD:278482
Laminin_EGF 991..1043 CDD:278482
Laminin_EGF 1043..1091 CDD:278482
Laminin_EGF 1094..1142 CDD:278482
Laminin_EGF 1142..1190 CDD:278482
COG6 1212..>1398 CDD:303003
TelA 1439..1782 CDD:226371
ApoLp-III_like 1545..1702 CDD:304399
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445149
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10574
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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