DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and lama5

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_009294934.1 Gene:lama5 / 321243 ZFINID:ZDB-GENE-030131-9823 Length:3665 Species:Danio rerio


Alignment Length:898 Identity:202/898 - (22%)
Similarity:307/898 - (34%) Gaps:336/898 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RATGTRMGLLLPIILALAIGSSAA------GIS--SNDPCYFEGKPRKCLPSFVNAAYGNPVQAS 59
            ||:.|.:.:.||::  |..|:..|      |::  |..|.||            |.|.|..:.|:
Zfish     8 RASRTPVLVFLPLL--LLTGTLTAQELPVNGVNGFSLHPPYF------------NLAEGTKITAT 58

  Fly    60 SVCGAQQPER-----YCELLRDGNAGE------------CRSCEQQRYGPAALTDLNNPSNVT-- 105
            :.||..:.|:     ||:|:....:|:            |.|.:..|..|     ::|..:.|  
Zfish    59 ATCGVDENEQPIQDLYCKLVGGPVSGDPSQTIQGQYCDICSSQDTNRAHP-----ISNAIDGTER 118

  Fly   106 CWRSGAVNVPHDPDSAPPDNVTLTLSLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPF 170
            .|:|     |....||..:.|.:||.||:.:.:.|:.:.|. .|||||...:.:|.|||:|:||:
Zfish   119 WWQS-----PPLSRSAKHNQVNVTLDLGQLFHVAYVLIKFA-NSPRPDLWVLERSIDFGKTYQPW 177

  Fly   171 QFYSS---QCQKFYGRPDRAKISKFNEQEARCINSQH-----DTGGAAQRFAFNTLEGRPSANDL 227
            ||::|   .|.:.:|:....:|  :::.:..|.....     :.|    ....:.:.|||.|.:.
Zfish   178 QFFASSKRDCIERFGQRTIERI--YHDDDVICTTEYSRIVPLENG----EIVVSLVNGRPGAMNF 236

  Fly   228 DSSLVLQDWVTATDIRVVFHRLELPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYD 292
            ..|.||:::..||:||:.|.|            .|.....:.|....|                 
Zfish   237 SYSPVLREFTKATNIRLRFLR------------TNTLLGHLMGKTLRD----------------- 272

  Fly   293 YNLQDNDSADAGYDEYEEPKKHLELDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATT 357
                                                                             
Zfish   273 ----------------------------------------------------------------- 272

  Fly   358 PPQQPPKVTPPGKVTPPSTAAPSAAASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGS 422
                 |.||.                       ..:|::.|.::||||.|||||..|        
Zfish   273 -----PTVTR-----------------------RYYYSIKDISIGGRCVCNGHAEAC-------- 301

  Fly   423 GTALSDQDDGQDEDTPSAPSLANHFGRSTQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRA 487
                    :.||.:.|                  ..:.|.|:|||.|..|:||.|.:...||..|
Zfish   302 --------NAQDPNDP------------------YKLQCDCQHNTCGTSCDRCCPGFNQFPWKPA 340

  Fly   488 TDNDANECKMCQCNGHARRCRFNLEL------YKLSGRVS-GGVCYNCQHDTTGRYCHYCREGYY 545
            |...||||:.|.|:.|:..|.::.|:      ..:.|..: ||||..|||.|||..|..|..|||
Zfish   341 TTYSANECEPCNCHRHSSECYYDPEIDQRRSSLDMQGEYNGGGVCVECQHHTTGVNCERCIPGYY 405

  Fly   546 RDATKPPNHRKVCKRCDCHPVGSTGKTCNHLSGQCPCKEGVTGLTCNRCARGYQQTRSHVAPCIK 610
            |....|......|.:|.|....:.| ||...:|:|.||...||..|::||.||:    |...|.:
Zfish   406 RSPDHPLESPFACSKCQCESEFTEG-TCEDRTGRCYCKPNYTGENCDQCAEGYE----HFPECYQ 465

  Fly   611 V-------PTNANMIQAESAGGGGGGG-----------------TGDYKD--------------- 636
            |       |...|:|..|....|..|.                 ||::.|               
Zfish   466 VLINGEVRPAGENIIDCECNAAGTEGNSCRPDPRTNTCVCKPEFTGEHCDTCSHGYFSINCQRCQ 530

  Fly   637 --GGGSQVEEMKKYCGKC------------KASPKKLN--LNKFCMEDYAILAKVIGH-----DR 680
              |.|..........|:|            :.:|...|  |.::|.      ..|:|.     |.
Zfish   531 CSGQGCLDGSCDAVTGQCVCRSGFQGYSCEQCAPGYFNYPLCQYCG------CSVVGSIPEMCDP 589

  Fly   681 ASQDISTEKFSIER----QNEIYKY-EINIQTIFKRNPMSGTTSSLLGRGNMMLLVPRKSIECQC 740
            |.:.:...:|:..|    |:..:.| ...:.|...|..:..:.|.|              .:|.|
Zfish   590 AGRCLCRPEFTGPRCDQCQSGFHSYPNCQVCTCDPRTSLDSSCSEL--------------DQCNC 640

  Fly   741 PKIKLNKSYLILG-RDSEAAPGYLAIGPSSVVLEWKDEWSLRMKRFQRRARKC 792
               :.|.|    | |..:.||||.:. ||....:...|.|        |:..|
Zfish   641 ---RPNYS----GPRCQQCAPGYYSY-PSCTPCDCSVEGS--------RSSSC 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 62/250 (25%)
EGF_Lam <458..484 CDD:238012 10/25 (40%)
EGF_Lam 498..555 CDD:238012 23/63 (37%)
EGF_Lam 560..608 CDD:238012 17/47 (36%)
NTR_netrin-1_like 661..791 CDD:239634 29/140 (21%)
lama5XP_009294934.1 Laminin_N 51..290 CDD:278484 68/377 (18%)
EGF_Lam 291..339 CDD:238012 23/81 (28%)
EGF_Lam 350..413 CDD:238012 23/62 (37%)
EGF_Lam 421..463 CDD:214543 17/46 (37%)
EGF_Lam 482..529 CDD:214543 6/46 (13%)
Laminin_EGF 529..577 CDD:278482 8/53 (15%)
Laminin_EGF 575..622 CDD:278482 9/52 (17%)
Laminin_EGF 620..667 CDD:278482 16/68 (24%)
EGF_Lam 664..711 CDD:238012 4/22 (18%)
Laminin_EGF 713..759 CDD:278482
Laminin_EGF 762..812 CDD:278482
EGF_Lam 815..858 CDD:238012
Laminin_EGF 1421..1469 CDD:278482
Laminin_EGF 1511..1561 CDD:278482
Laminin_EGF 1559..1607 CDD:278482
Laminin_B 1672..1796 CDD:278481
EGF_Lam 1842..1881 CDD:238012
Laminin_EGF 1894..1947 CDD:278482
EGF_Lam 1949..2002 CDD:238012
Laminin_EGF 2004..2048 CDD:278482
Laminin_EGF 2051..2099 CDD:278482
Laminin_EGF 2099..>2128 CDD:278482
mycoplas_twoTM 2158..>2351 CDD:275320
Laminin_I 2171..2429 CDD:283627
COG1340 2319..2558 CDD:224259
BAR 2383..2637 CDD:299863
Laminin_II 2611..2741 CDD:283628
LamG 2757..2896 CDD:214598
LamG 2932..3075 CDD:238058
LamG 3110..3249 CDD:238058
LamG 3320..3466 CDD:238058
LamG 3490..3642 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.