DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and Lama1

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001101707.2 Gene:Lama1 / 316758 RGDID:1307207 Length:3083 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532
EGF_Lam <458..484 CDD:238012
EGF_Lam 498..555 CDD:238012
EGF_Lam 560..608 CDD:238012
NTR_netrin-1_like 661..791 CDD:239634
Lama1NP_001101707.2 LamNT 25..275 CDD:214532
EGF_Lam 277..324 CDD:238012
Laminin_EGF 404..463 CDD:278482
Laminin_EGF 461..507 CDD:278482
Laminin_B 575..703 CDD:278481
EGF_Lam <715..739 CDD:214543
EGF_Lam 748..796 CDD:238012
Laminin_EGF 798..853 CDD:278482
EGF_Lam 855..907 CDD:238012
Laminin_EGF 909..955 CDD:278482
Laminin_EGF 958..1005 CDD:278482
EGF_Lam 1004..1049 CDD:238012
Laminin_EGF 1051..1099 CDD:278482
Laminin_EGF 1097..1154 CDD:278482
Laminin_B 1225..1351 CDD:278481
Laminin_EGF 1410..1456 CDD:278482
Laminin_EGF 1459..1513 CDD:278482
Laminin_EGF 1516..>1553 CDD:278482
Laminin_I 1574..1825 CDD:283627
SPEC 1613..1861 CDD:295325
Laminin_I 1838..2092 CDD:283627
Laminin_II 2018..2152 CDD:283628
LamG 2136..2285 CDD:238058
LamG 2314..2470 CDD:238058
LamG 2495..2659 CDD:238058
Laminin_G_1 2751..2880 CDD:278483
LamG 2900..3053 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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