DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and Lama2

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_038954896.1 Gene:Lama2 / 309368 RGDID:1308889 Length:3121 Species:Rattus norvegicus


Alignment Length:712 Identity:161/712 - (22%)
Similarity:254/712 - (35%) Gaps:239/712 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GLLLPIILALAIGSSAAGISS--NDPCYFEGKPRKCLPSFVNAAYGNPVQASSVCGAQQPERYCE 72
            |:||.::|.:..||.......  ..|.:   :.|...|:.:|.|....:..::.||.:.||.||:
  Rat     6 GILLLLLLGILEGSQTQRPQQRRQSPAH---QQRGLFPAVLNLASNALITTNATCGEKGPEMYCK 67

  Fly    73 LL-----RDGNAGECRSCEQQRYGPAALTDLNN--PSNVTCWRSGAVNVPHDPDSAPPDNVTLTL 130
            |:     :.....:||.|.|....|.....:.|  ....|.|:|     |...:......||:||
  Rat    68 LVEHVPGQPVRNPQCRICNQNSSHPYQRHPITNAIDGKNTWWQS-----PSIKNGVEYHYVTITL 127

  Fly   131 SLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYS---SQCQKFY------GRPDR 186
            .|.:.:::.|:.:. ...||||.:..:.:|.| .:.::|:|:::   ::|...|      |.|..
  Rat   128 DLQQVFQIAYVIVK-AANSPRPGNWILERSLD-DEEYKPWQYHAVTDTECLTLYNIYPRTGPPSY 190

  Fly   187 AKISKFNEQEARCINSQH-----DTGGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVF 246
            ||     :.|..|.:...     :.|    ....:.:.|||||:|....|:  ::.:|..||:.|
  Rat   191 AK-----DDEVICTSFYSKIHPLENG----EIHISLINGRPSADDPSPELL--EFTSARYIRLRF 244

  Fly   247 HRLELPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEP 311
            .|         ::..|                 |||.:...:|                     |
  Rat   245 QR---------IRTLN-----------------ADLMMFAHKD---------------------P 262

  Fly   312 KKHLELDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPST 376
            :   |:|             .:|.|:                                       
  Rat   263 R---EID-------------PIVTRR--------------------------------------- 272

  Fly   377 AAPSAAASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAP 441
                           .:|:|.|.:|||.|.|.|||..|                       |..|
  Rat   273 ---------------YYYSVKDISVGGMCICYGHARAC-----------------------PLDP 299

  Fly   442 SLANHFGRSTQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARR 506
                    :|..|     .|.|:|||.|..|:||.|.:..:||...|.....||:.|.|:|.|..
  Rat   300 --------ATNKS-----RCECEHNTCGESCDRCCPGFHQKPWRAGTFLTKTECEACNCHGKAEE 351

  Fly   507 CRF-------NLELYKLSGR-VSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDC 563
            |.:       ||.| .:.|: :.||||.||.|:|.|..|..|.:|::|.....|::.:.|:.|.|
  Rat   352 CYYDETVASRNLSL-NIHGKYIGGGVCINCTHNTAGINCETCIDGFFRPKGVSPSYPRPCQPCHC 415

  Fly   564 HPVGSTGKTC----NHL-----SGQCPCKEGVTGLTCNRCARGYQ------------QTRSHVAP 607
            .|.||..:.|    .|.     .|.|.||.|..|:.|:||.|||:            ...::..|
  Rat   416 DPAGSLSEVCIKDEKHTRRGLKPGSCYCKPGFGGMNCDRCVRGYRGYPDCQPCNCSGLGSTNQDP 480

  Fly   608 CIKVPTNANMIQAESAGGGGGGGTGDYKDGGGSQVEEMKKYCGKCKASPKKLNLNKFCMEDY 669
            ||...:....::.|..        ...|.|..:..||.:|.|.:|..|    .::..|...|
  Rat   481 CIGPCSCKENVEGEDC--------SHCKFGFFNLQEENQKGCEECFCS----GVSDRCQSSY 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 56/244 (23%)
EGF_Lam <458..484 CDD:238012 10/25 (40%)
EGF_Lam 498..555 CDD:238012 23/64 (36%)
EGF_Lam 560..608 CDD:238012 19/68 (28%)
NTR_netrin-1_like 661..791 CDD:239634 2/9 (22%)
Lama2XP_038954896.1 Laminin_N 39..284 CDD:395009 69/379 (18%)
EGF_Lam 286..333 CDD:238012 22/82 (27%)
Laminin_EGF 413..470 CDD:395007 19/56 (34%)
Laminin_EGF 468..514 CDD:395007 9/53 (17%)
Laminin_B 582..721 CDD:395006
EGF_Lam 755..804 CDD:238012
EGF_Lam 805..862 CDD:238012
EGF_Lam 863..915 CDD:238012
EGF_Lam 916..963 CDD:238012
EGF_Lam 966..1010 CDD:214543
EGF_Lam 1012..1057 CDD:238012
Laminin_EGF 1059..1107 CDD:395007
Laminin_EGF 1105..1162 CDD:395007
LamB 1228..1363 CDD:214597
EGF_Lam <1378..1406 CDD:238012
Laminin_EGF 1419..1465 CDD:395007
Laminin_EGF 1468..1523 CDD:395007
EGF_Lam 1526..>1563 CDD:238012
Laminin_I 1593..1851 CDD:310534
SMC_prok_B <1675..>2033 CDD:274008
Laminin_II 2036..2171 CDD:368703
Laminin_G_1 2173..2313 CDD:395008
Laminin_G_1 2367..2506 CDD:395008
LamG 2527..2689 CDD:238058
Laminin_G_1 2792..2920 CDD:395008
LamG 2940..3092 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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