DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NetB and Ntn5

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_017444633.2 Gene:Ntn5 / 308587 RGDID:1565197 Length:516 Species:Rattus norvegicus


Alignment Length:794 Identity:197/794 - (24%)
Similarity:279/794 - (35%) Gaps:309/794 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ATGTRMGLLLPIILALAIGSSAAGISSNDPCYFE-GKPRKCLPSFVNAAYGNPVQASSVCGAQQP 67
            :|||...:.:.:.|:|.:..|.|   ::||||.. |:||.|||         ||           
  Rat     7 STGTGSAVTVLVALSLLLLLSQA---TSDPCYDPGGRPRFCLP---------PV----------- 48

  Fly    68 ERYCELLRDGNAGECRSCEQQRYGPAALTDLNNPSNVTCWRSGAVNVPHD-PDSAPPDNVTLTLS 131
                               .|..|.||.     |.:.||      .:|.| ||  |..|.||||.
  Rat    49 -------------------TQLVGKAAA-----PCSQTC------ALPADSPD--PVCNGTLTLD 81

  Fly   132 LGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKFYGRPDRAKISKFNEQE 196
            |...:.||.::|.||  :..|.:|.:..:...|..|:|          .:.||            
  Rat    82 LDGSFLLTSVTLRFC--TAGPPALVLSAAWAIGGPWRP----------LWRRP------------ 122

  Fly   197 ARCINSQHDTGGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLELPPQLLKVKNA 261
                                                                             
  Rat   123 ----------------------------------------------------------------- 122

  Fly   262 NAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLELDDDHLHLDY 326
             |:...:||                                                        
  Rat   123 -AWPGVLGG-------------------------------------------------------- 130

  Fly   327 ASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVT---PPGKVTPPSTAAPSAAASAVTL 388
                                               |.|||   |||    |.|   ...||.:.:
  Rat   131 -----------------------------------PKKVTFHSPPG----PKT---RIVASYLRV 153

  Fly   389 PISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFGRSTQM 453
            .:.....:....|.|||:|:|||:.|.|...                                  
  Rat   154 ELGGKAGLVTTGVRGRCQCHGHAARCAARAQ---------------------------------- 184

  Fly   454 SAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFNLELYKLSG 518
                ...|.|:|:|.||.||.|:|.:.|.||..||....:.|..|.||.||||||||.||::|||
  Rat   185 ----PPRCRCRHHTTGPGCESCRPSHRDWPWRPATPQHPHPCLPCSCNQHARRCRFNSELFRLSG 245

  Fly   519 RVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCHPVGSTGKTCNHLSGQCPCK 583
            ..|||||..|:|.|.||:||||:.|::||.::|....|.|:.|.|||:|:||..||..||||.||
  Rat   246 GRSGGVCERCRHHTAGRHCHYCQPGFWRDPSQPITSPKACRACQCHPIGATGGMCNQTSGQCSCK 310

  Fly   584 EGVTGLTCNRCARGYQQTRSHVAPCIKVPTNANMIQAESAGGGGGGGTGDYKDGGGSQVEEMKKY 648
            .||||||||.|..||||:||...||.::|.....:..........              .:.:.|
  Rat   311 LGVTGLTCNHCGPGYQQSRSPRMPCQRIPEATTALATTPVASRSD--------------PQCQGY 361

  Fly   649 CGKCKASPKKLNLNKFCMEDYAILAKVIGHDRASQDISTEKFSIERQNEIYKYEINIQTIFKRNP 713
            | ....|...:||.|:|.:||.:.|:|....:.|...|....|.....|.::..:::..:||:..
  Rat   362 C-NVSVSSVHMNLQKYCQQDYVLHARVAESAQVSASSSLSSLSEAVGPEWWRLAVHVLAVFKQRA 425

  Fly   714 MSGTTSSLLGRGNMMLLVPRKSIECQCPKIKLNKSYLILGRDSE--AAPGYLAIGPSSVVLEWKD 776
            ..      :.||:....|||..:.|.|.:::....||:|||.:|  ..|.:|.:...|:.|.|:.
  Rat   426 WP------VRRGSQEAWVPRADLSCGCLRLRPGADYLLLGRAAENHTDPAHLILNRHSLALPWRP 484

  Fly   777 EWSLRMKRFQRRAR 790
            .|:..::|.|::.|
  Rat   485 RWAGPLRRLQQKER 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 38/225 (17%)
EGF_Lam <458..484 CDD:238012 11/25 (44%)
EGF_Lam 498..555 CDD:238012 34/56 (61%)
EGF_Lam 560..608 CDD:238012 30/47 (64%)
NTR_netrin-1_like 661..791 CDD:239634 35/132 (27%)
Ntn5XP_017444633.2 Laminin_N <77..>120 CDD:413488 15/54 (28%)
EGF_Lam 169..213 CDD:238012 21/81 (26%)
EGF_Lam 224..278 CDD:238012 33/53 (62%)
EGF_Lam 287..336 CDD:238012 31/48 (65%)
NTR_netrin-1_like 373..502 CDD:239634 35/132 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 65 1.000 Domainoid score I9776
eggNOG 1 0.900 - - E1_KOG3512
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D368755at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10574
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.880

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