DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and Lamb3

DIOPT Version :10

Sequence 1:NP_511155.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:NP_001094311.1 Gene:Lamb3 / 305078 RGDID:1562668 Length:1172 Species:Rattus norvegicus


Alignment Length:624 Identity:154/624 - (24%)
Similarity:226/624 - (36%) Gaps:216/624 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 ISSNDPCYFEGKPRKCLPSFVNAAYGNP--VQASSVCGAQQPERYCELLRDGNAGECRSCEQ--- 87
            :.:..||    ....|.|...:...|..  ::|||.||..:||.||........ :|..|:.   
  Rat    16 LCAQQPC----SRGACYPPVGDLLIGRTQLLRASSTCGLTKPETYCTQYGQWQM-KCCKCDSRLP 75

  Fly    88 QRYGPAALTDLNNPSN-VTCWRSGAVNVPHDPDSAPPDNVTLTLSLGKKYELTYISLSFCPRSPR 151
            :.|....:.::.:.|. :..|:|       ..|.:|   |:|.|.|.|:.:|..|.:.|  :...
  Rat    76 RNYNSHRVENVVSSSGPMRWWQS-------QNDVSP---VSLQLDLDKRMQLQDIMMDF--KGLM 128

  Fly   152 PDSLAIFKSSDFGQTWQPFQFYSSQC-----QKFYGRPDRAKISKFNEQEARC--INSQ---HDT 206
            |..:.|.:|||||:||:.:|:.::.|     |...|:|.       |.|:.||  ::.:   |.|
  Rat   129 PAGMLIERSSDFGKTWRVYQYLATDCASTFPQVHQGQPK-------NWQDVRCRPLSQRPNGHLT 186

  Fly   207 GGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLELPPQLLKVKNANAFSDEMGGS 271
            ||..|   .|.:: ..||.....|..:|:....|::||.|.:|...||                 
  Rat   187 GGKVQ---LNLMD-LASAIPASQSKKIQELGDITNLRVNFTKLAPVPQ----------------- 230

  Fly   272 REEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLELDDDHLHLDYASDGESVVKR 336
                                                                             
  Rat   231 ----------------------------------------------------------------- 230

  Fly   337 QGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSAAASAVTLPISQHYAVSDFAV 401
            :|.:..|||                                                :|||...:
  Rat   231 RGSYPPSAY------------------------------------------------FAVSQLRL 247

  Fly   402 GGRCKCNGHASECVATVS--SGSGTALSDQDDGQDEDTPSAPSLANHFGRSTQMSAKLTMTCACK 464
            .|.|.|:|||..|.....  :||.||:...|                             .|.|:
  Rat   248 QGSCFCHGHADRCAPNPGGPTGSTTAVQVND-----------------------------VCVCQ 283

  Fly   465 HNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFNLELYKLSGRVSGGVCYNCQ 529
            ||||||.|:||.|||.:|||..|...|.:||:.|.||||:..|.|:..::..|...|||||.|||
  Rat   284 HNTAGPNCDRCAPFYNNRPWRPAEGQDIHECQRCDCNGHSETCHFDPAVFAASQGTSGGVCDNCQ 348

  Fly   530 HDTTGRYCHYCREGYYRDATKP--PNHRKVCKRCDCHPVGST-GKTCNHLSGQCPCKEGVTGLTC 591
            ..|.|:.|..|:..|:|: .:|  |.| :.|..|:|.|.|:. |..|:.|:|||.||:.|.|..|
  Rat   349 DHTEGKNCERCQLHYFRN-RRPGAPIH-ETCIPCECDPDGAVPGAPCDRLTGQCVCKDHVQGERC 411

  Fly   592 NRCARGY------QQTRSHVAPCIKVPTNANMIQAESAG 624
            :.|..|:      .....|...|..:.|..:|...|..|
  Rat   412 DLCKPGFTGLTFANPQGCHPCDCSILGTRQDMPCEEETG 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_511155.1 LamNT 37..261 CDD:214532 63/239 (26%)
EGF_Lam <458..484 CDD:238012 15/25 (60%)
EGF_Lam 498..555 CDD:238012 24/58 (41%)
EGF_Lam 560..608 CDD:238012 18/54 (33%)
NTR_netrin-1_like 661..791 CDD:239634
Lamb3NP_001094311.1 Laminin_N 21..249 CDD:470680 72/385 (19%)
EGF_Lam 250..305 CDD:238012 28/83 (34%)
Laminin_EGF 317..367 CDD:395007 22/50 (44%)
Laminin_EGF 380..429 CDD:395007 17/48 (35%)
EGF_Lam 431..480 CDD:238012 5/20 (25%)
Laminin_EGF 482..535 CDD:395007
EGF_Lam 535..572 CDD:214543
SMC_prok_B <834..1115 CDD:274008
cc_LAMB_C 1102..1172 CDD:424069
Blue background indicates that the domain is not in the aligned region.

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