DRSC/TRiP Functional Genomics Resources

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Protein Alignment NetB and Lamb1

DIOPT Version :9

Sequence 1:NP_001162753.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster
Sequence 2:XP_003750185.1 Gene:Lamb1 / 298941 RGDID:1306311 Length:1834 Species:Rattus norvegicus


Alignment Length:857 Identity:184/857 - (21%)
Similarity:298/857 - (34%) Gaps:279/857 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RATGTRM-GLLLPIILALAIGSSA---AGISSNDPCYFEG-KPRKCLPSFVNAAYG--NPVQASS 60
            ||...|: ||.:.::...|.|..|   ..:.:.:|.:..| ....|.|:..:...|  ..:..:|
  Rat    38 RAASPRLQGLDMGVLQVFAFGVLALWGTRVCAQEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTS 102

  Fly    61 VCGAQQPERYCELLRDGNAGECRSCE-QQRYGPAALTD---LNN------PSNVTCWRSGAVNVP 115
            .||..:||.||.:.......:|..|: :..|......|   :.|      |:.:..|......| 
  Rat   103 TCGLHKPEPYCIVSHLQEDKKCFICDSRDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSENGV- 166

  Fly   116 HDPDSAPPDNVTLTLSLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKF 180
                    :|||:.|.|..::..|::.::|  ::.||.::.|.:|||||:||..:::::..|:..
  Rat   167 --------ENVTVQLDLEAEFHFTHLIMTF--KTFRPAAMLIERSSDFGKTWGVYRYFAYDCESS 221

  Fly   181 YGRPDRAKISKFNE--QEARCINSQHDTGGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIR 243
            :.......:.|.::  .::|..:.:..|.|   ...|..|:......|..|..: |:.:..|::|
  Rat   222 FPGISTGPMKKVDDIICDSRYSDIEPSTEG---EVIFRALDPAFKIEDPYSPRI-QNLLKITNLR 282

  Fly   244 VVFHRLELPPQLLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEY 308
            :.|.:|                                           :.|.||          
  Rat   283 IKFVKL-------------------------------------------HTLGDN---------- 294

  Fly   309 EEPKKHLELDDDHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTP 373
                    |.|..:.:                    .||:|                        
  Rat   295 --------LLDSRMEI--------------------REKYY------------------------ 307

  Fly   374 PSTAAPSAAASAVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTP 438
                                |||.|..|.|.|.|.||||||...             ||.:|:..
  Rat   308 --------------------YAVYDMVVRGNCFCYGHASECAPV-------------DGFNEEVE 339

  Fly   439 SAPSLANHFGRSTQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGH 503
            .  .:..|              |.|:|||.|..||.|..||.|.||..|...::|.||.|.||.|
  Rat   340 G--MVHGH--------------CMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEH 388

  Fly   504 ARRCRFNLELYKLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCHPVGS 568
            :..|.|::.::..:|.||||||.||||:|.||.|..|:..|::...:......:|:.|.|.|.||
  Rat   389 SSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGS 453

  Fly   569 -TGKTCNH--------LSGQCPCKEGVTGLTCNRCARGYQQTRSHVAPCIKVPTNANMIQAESAG 624
             .|..|:.        ::|||.||..|.|..|:.|..|:....:      :.|...........|
  Rat   454 ENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSA------EDPFGCKSCACNPLG 512

  Fly   625 GGGGGGTGDYKDG--------GGSQVEE-MKKYCG------KCKASPKKLN--LNKFCMED---Y 669
            ...||...|.:.|        .|.:.:: :.::.|      .|:.....|.  ||..|.||   .
  Rat   513 TIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQC 577

  Fly   670 AILAKVIGHDRASQDISTEKFSIERQNEIYKYEINIQTIFKRNPMSGTTSSLLGRGNMMLLVPRK 734
            :.|..:||  |...::.:..:.....:.||:.|                .:.||.|  :::|.|:
  Rat   578 SCLPHMIG--RQCNEVESGYYFTTLDHYIYEAE----------------EANLGPG--VVVVERR 622

  Fly   735 SIECQCPKIKLNKSYLILGRDSEAAPGYLAIGPSSVVLEW---------------------KDEW 778
            .|:.:.|              |...||::.: |....||:                     .|.|
  Rat   623 YIQDRIP--------------SWTGPGFVRV-PEGAYLEFFIDNIPHSMEYEILIRYEPQLPDHW 672

  Fly   779 SLRMKRFQRRAR 790
            ...:...||..|
  Rat   673 EKAVITVQRPGR 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NetBNP_001162753.1 LamNT 37..261 CDD:214532 50/238 (21%)
EGF_Lam <458..484 CDD:238012 12/25 (48%)
EGF_Lam 498..555 CDD:238012 23/56 (41%)
EGF_Lam 560..608 CDD:238012 17/56 (30%)
NTR_netrin-1_like 661..791 CDD:239634 30/154 (19%)
Lamb1XP_003750185.1 Laminin_N 92..317 CDD:278484 60/364 (16%)
EGF_Lam 319..371 CDD:238012 26/80 (33%)
EGF_Lam 383..435 CDD:238012 23/51 (45%)
Laminin_EGF 446..503 CDD:278482 18/62 (29%)
EGF_Lam 505..556 CDD:238012 7/50 (14%)
EGF_Lam 557..>596 CDD:238012 10/40 (25%)
EGF_Lam 821..866 CDD:214543
Laminin_EGF 869..917 CDD:278482
EGF_Lam 914..959 CDD:238012
Laminin_EGF 965..1021 CDD:278482
Laminin_EGF 1024..1068 CDD:278482
Laminin_EGF 1076..1129 CDD:278482
Laminin_EGF 1132..1180 CDD:278482
Laminin_EGF 1180..1230 CDD:278482
MA 1500..1739 CDD:214599
MCP_signal 1504..1706 CDD:304920
Prefoldin 1654..1768 CDD:298833
RILP-like <1738..1826 CDD:304877
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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